Experiment: Sisomicin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0058 and Ga0059261_0059 are separated by 15 nucleotides Ga0059261_0059 and Ga0059261_0060 are separated by 2 nucleotides Ga0059261_0060 and Ga0059261_0061 are separated by 147 nucleotides Ga0059261_0061 and Ga0059261_0062 are separated by 33 nucleotides Ga0059261_0062 and Ga0059261_0063 overlap by 4 nucleotides
Ga0059261_0058: Ga0059261_0058 - monothiol glutaredoxin, Grx4 family, at 52,462 to 52,791
_0058
Ga0059261_0059: Ga0059261_0059 - Stress-induced morphogen (activity unknown), at 52,807 to 53,049
_0059
Ga0059261_0060: Ga0059261_0060 - Uncharacterized conserved protein, at 53,052 to 53,375
_0060
Ga0059261_0061: Ga0059261_0061 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 53,523 to 54,368
_0061
Ga0059261_0062: Ga0059261_0062 - hypothetical protein, at 54,402 to 54,854
_0062
Ga0059261_0063: Ga0059261_0063 - Ribonuclease I, at 54,851 to 55,549
_0063
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.887 kb on - strand, within Ga0059261_0059 at 52.887 kb on - strand, within Ga0059261_0059 at 52.887 kb on - strand, within Ga0059261_0059 at 52.953 kb on - strand, within Ga0059261_0059 at 53.053 kb on + strand at 53.054 kb on - strand at 53.054 kb on - strand at 53.225 kb on - strand, within Ga0059261_0060 at 53.225 kb on - strand, within Ga0059261_0060 at 53.225 kb on - strand, within Ga0059261_0060 at 53.225 kb on - strand, within Ga0059261_0060 at 53.225 kb on - strand, within Ga0059261_0060 at 53.410 kb on + strand at 53.410 kb on + strand at 53.411 kb on - strand at 53.411 kb on - strand at 53.411 kb on - strand at 53.411 kb on - strand at 53.411 kb on - strand at 53.489 kb on + strand at 53.491 kb on + strand at 53.491 kb on + strand at 53.491 kb on + strand at 54.373 kb on + strand at 54.373 kb on + strand at 54.373 kb on + strand at 54.374 kb on - strand at 54.438 kb on + strand at 54.438 kb on + strand at 54.439 kb on - strand at 54.439 kb on - strand at 54.439 kb on - strand at 54.439 kb on - strand at 54.439 kb on - strand at 54.439 kb on - strand at 54.456 kb on - strand, within Ga0059261_0062 at 54.612 kb on + strand, within Ga0059261_0062 at 54.612 kb on + strand, within Ga0059261_0062 at 54.612 kb on + strand, within Ga0059261_0062 at 54.613 kb on - strand, within Ga0059261_0062 at 54.708 kb on + strand, within Ga0059261_0062 at 54.708 kb on + strand, within Ga0059261_0062 at 54.709 kb on - strand, within Ga0059261_0062 at 54.709 kb on - strand, within Ga0059261_0062 at 54.709 kb on - strand, within Ga0059261_0062 at 55.003 kb on + strand, within Ga0059261_0063 at 55.003 kb on + strand, within Ga0059261_0063 at 55.003 kb on + strand, within Ga0059261_0063 at 55.003 kb on + strand at 55.003 kb on + strand, within Ga0059261_0063 at 55.004 kb on - strand, within Ga0059261_0063 at 55.004 kb on - strand, within Ga0059261_0063 at 55.004 kb on - strand, within Ga0059261_0063 at 55.142 kb on + strand, within Ga0059261_0063 at 55.143 kb on - strand, within Ga0059261_0063 at 55.143 kb on - strand at 55.143 kb on - strand at 55.143 kb on - strand, within Ga0059261_0063 at 55.229 kb on + strand, within Ga0059261_0063 at 55.230 kb on - strand, within Ga0059261_0063 at 55.230 kb on - strand at 55.230 kb on - strand, within Ga0059261_0063 at 55.230 kb on - strand, within Ga0059261_0063 at 55.230 kb on - strand, within Ga0059261_0063 at 55.230 kb on - strand, within Ga0059261_0063 at 55.230 kb on - strand, within Ga0059261_0063 at 55.271 kb on + strand, within Ga0059261_0063 at 55.272 kb on - strand, within Ga0059261_0063 at 55.272 kb on - strand, within Ga0059261_0063 at 55.295 kb on + strand, within Ga0059261_0063 at 55.295 kb on + strand, within Ga0059261_0063 at 55.296 kb on - strand, within Ga0059261_0063 at 55.296 kb on - strand, within Ga0059261_0063 at 55.296 kb on - strand, within Ga0059261_0063 at 55.296 kb on - strand, within Ga0059261_0063 at 55.311 kb on - strand, within Ga0059261_0063
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.12 mg/ml remove 52,887 - Ga0059261_0059 0.33 +0.3 52,887 - Ga0059261_0059 0.33 +0.2 52,887 - Ga0059261_0059 0.33 +0.1 52,953 - Ga0059261_0059 0.60 +0.1 53,053 + +0.8 53,054 - +0.4 53,054 - -0.6 53,225 - Ga0059261_0060 0.53 -1.1 53,225 - Ga0059261_0060 0.53 -0.1 53,225 - Ga0059261_0060 0.53 +0.4 53,225 - Ga0059261_0060 0.53 -0.1 53,225 - Ga0059261_0060 0.53 +0.4 53,410 + +0.2 53,410 + -1.5 53,411 - -0.3 53,411 - -0.1 53,411 - -0.7 53,411 - +0.2 53,411 - +0.4 53,489 + -0.3 53,491 + -1.2 53,491 + +0.6 53,491 + -0.5 54,373 + -0.1 54,373 + -0.0 54,373 + +2.1 54,374 - -2.1 54,438 + -0.5 54,438 + -0.1 54,439 - -0.2 54,439 - +0.4 54,439 - +1.7 54,439 - +0.5 54,439 - -1.3 54,439 - -1.2 54,456 - Ga0059261_0062 0.12 -0.2 54,612 + Ga0059261_0062 0.46 +1.4 54,612 + Ga0059261_0062 0.46 +1.5 54,612 + Ga0059261_0062 0.46 -0.8 54,613 - Ga0059261_0062 0.47 +0.1 54,708 + Ga0059261_0062 0.68 +0.5 54,708 + Ga0059261_0062 0.68 +1.0 54,709 - Ga0059261_0062 0.68 +1.1 54,709 - Ga0059261_0062 0.68 +0.5 54,709 - Ga0059261_0062 0.68 +0.7 55,003 + Ga0059261_0063 0.22 -0.2 55,003 + Ga0059261_0063 0.22 +0.0 55,003 + Ga0059261_0063 0.22 +1.1 55,003 + +0.1 55,003 + Ga0059261_0063 0.22 -0.8 55,004 - Ga0059261_0063 0.22 -0.2 55,004 - Ga0059261_0063 0.22 +0.9 55,004 - Ga0059261_0063 0.22 -0.2 55,142 + Ga0059261_0063 0.42 -1.8 55,143 - Ga0059261_0063 0.42 -0.4 55,143 - +0.1 55,143 - -0.5 55,143 - Ga0059261_0063 0.42 -0.4 55,229 + Ga0059261_0063 0.54 +0.1 55,230 - Ga0059261_0063 0.54 -0.7 55,230 - +1.1 55,230 - Ga0059261_0063 0.54 +0.2 55,230 - Ga0059261_0063 0.54 -0.7 55,230 - Ga0059261_0063 0.54 -0.4 55,230 - Ga0059261_0063 0.54 -0.1 55,230 - Ga0059261_0063 0.54 -2.1 55,271 + Ga0059261_0063 0.60 -0.8 55,272 - Ga0059261_0063 0.60 +0.5 55,272 - Ga0059261_0063 0.60 +1.1 55,295 + Ga0059261_0063 0.64 +0.3 55,295 + Ga0059261_0063 0.64 +0.9 55,296 - Ga0059261_0063 0.64 +1.3 55,296 - Ga0059261_0063 0.64 +0.4 55,296 - Ga0059261_0063 0.64 -0.9 55,296 - Ga0059261_0063 0.64 -0.7 55,311 - Ga0059261_0063 0.66 +0.0
Or see this region's nucleotide sequence