Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01365

Experiment: PYE with nitrite 1.25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 1.25 mM
1,480,224	+				+1.2
1,480,237	-				-1.4
1,480,245	-				+0.9
1,480,261	+				-0.4
1,480,276	+		CCNA_01364	0.11	+0.5
1,480,276	+				+0.9
1,480,276	+		CCNA_01364	0.11	-0.4
1,480,276	+		CCNA_01364	0.11	-0.1
1,480,276	+		CCNA_01364	0.11	+1.2
1,480,276	+		CCNA_01364	0.11	+0.3
1,480,276	+		CCNA_01364	0.11	+0.9
1,480,276	+		CCNA_01364	0.11	-0.5
1,480,281	+		CCNA_01364	0.11	+1.9
1,480,284	-		CCNA_01364	0.12	-1.6
1,480,284	-		CCNA_01364	0.12	-1.4
1,480,284	-		CCNA_01364	0.12	-0.1
1,480,284	-		CCNA_01364	0.12	+1.9
1,480,284	-		CCNA_01364	0.12	+2.2
1,480,284	-		CCNA_01364	0.12	+1.9
1,480,284	-		CCNA_01364	0.12	-0.1
1,480,302	+		CCNA_01364	0.13	-0.3
1,480,302	+		CCNA_01364	0.13	+2.2
1,480,310	+		CCNA_01364	0.14	-0.1
1,480,338	+		CCNA_01364	0.17	+0.9
1,480,338	+		CCNA_01364	0.17	-1.7
1,480,338	+		CCNA_01364	0.17	+0.6
1,480,338	+		CCNA_01364	0.17	-0.7
1,480,338	+		CCNA_01364	0.17	-1.0
1,480,344	+		CCNA_01364	0.17	+1.3
1,480,346	-		CCNA_01364	0.18	+0.2
1,480,346	-		CCNA_01364	0.18	+0.9
1,480,346	-		CCNA_01364	0.18	-0.6
1,480,346	-		CCNA_01364	0.18	-1.7
1,480,346	-		CCNA_01364	0.18	-1.1
1,480,388	-		CCNA_01364	0.22	-0.7
1,480,439	-		CCNA_01364	0.27	-1.9
1,480,447	+		CCNA_01364	0.27	-0.1
1,480,474	+		CCNA_01364	0.30	+0.5
1,480,520	-		CCNA_01364	0.35	-2.1
1,480,520	-		CCNA_01364	0.35	-0.4
1,480,533	+		CCNA_01364	0.36	-0.6
1,480,620	+		CCNA_01364	0.44	-0.5
1,480,654	+		CCNA_01364	0.48	+0.3
1,480,662	+		CCNA_01364	0.48	+0.6
1,480,662	-		CCNA_01364	0.48	+2.9
1,480,691	-		CCNA_01364	0.51	-1.8
1,480,747	+		CCNA_01364	0.57	+0.7
1,480,747	+		CCNA_01364	0.57	+0.1
1,480,747	+		CCNA_01364	0.57	+1.6
1,480,755	-		CCNA_01364	0.57	+1.9
1,480,775	+		CCNA_01364	0.59	+0.1
1,480,783	-		CCNA_01364	0.60	+1.2
1,480,783	-		CCNA_01364	0.60	-0.1
1,480,783	-		CCNA_01364	0.60	-0.7
1,480,783	-		CCNA_01364	0.60	-0.7
1,480,783	-		CCNA_01364	0.60	+1.9
1,480,800	-		CCNA_01364	0.62	+1.2
1,480,807	-		CCNA_01364	0.62	-0.4
1,480,812	-		CCNA_01364	0.63	+0.6
1,480,828	-		CCNA_01364	0.65	-0.1
1,480,834	+		CCNA_01364	0.65	+1.6
1,480,834	+		CCNA_01364	0.65	+0.6
1,480,849	-		CCNA_01364	0.67	-0.9
1,480,851	+		CCNA_01364	0.67	+0.9
1,480,914	+		CCNA_01364	0.73	+0.4
1,480,936	+		CCNA_01364	0.75	+0.9
1,481,036	-		CCNA_01364	0.85	+1.8
1,481,036	-		CCNA_01364	0.85	+2.6
1,481,065	-		CCNA_01364	0.88	-0.4
1,481,108	+				+0.4
1,481,108	+				-0.2
1,481,111	-				+1.7
1,481,116	-				-0.8
1,481,116	-				-0.1
1,481,116	-				+0.8
1,481,194	+				+1.9
1,481,194	+				-0.7
1,481,194	+				-0.7
1,481,202	-				+1.8
1,481,202	-				+0.6
1,481,202	-				-0.4
1,481,202	-				+1.0
1,481,202	-				+0.1
1,481,202	-				+2.7
1,481,202	-				+1.5
1,481,202	-				-0.1
1,481,202	-				+0.7
1,481,202	-				+2.3
1,481,207	+				-0.2
1,481,217	+				+0.3
1,481,217	+				-0.1
1,481,225	-				+0.8
1,481,262	+		CCNA_01365	0.13	-0.9
1,481,290	+		CCNA_01365	0.18	-0.4
1,481,301	+		CCNA_01365	0.20	+0.3
1,481,404	-		CCNA_01365	0.40	+1.5
1,481,433	-		CCNA_01365	0.46	+0.9
1,481,502	-		CCNA_01365	0.59	+0.0
1,481,511	+		CCNA_01365	0.61	+0.6
1,481,514	-		CCNA_01365	0.61	-0.0
1,481,518	+		CCNA_01365	0.62	+2.2
1,481,519	-		CCNA_01365	0.62	+0.7
1,481,519	-		CCNA_01365	0.62	+2.9
1,481,519	-		CCNA_01365	0.62	-0.7
1,481,526	-		CCNA_01365	0.64	+1.4
1,481,526	-		CCNA_01365	0.64	+0.5
1,481,526	-		CCNA_01365	0.64	+0.3
1,481,526	-		CCNA_01365	0.64	-0.0
1,481,526	-		CCNA_01365	0.64	+0.6
1,481,547	+		CCNA_01365	0.68	+1.2
1,481,555	-		CCNA_01365	0.69	+0.6
1,481,570	-		CCNA_01365	0.72	+1.6
1,481,570	-		CCNA_01365	0.72	+0.5
1,481,570	-				+0.9
1,481,609	+		CCNA_01365	0.80	-0.7
1,481,609	+		CCNA_01365	0.80	-0.2
1,481,609	+		CCNA_01365	0.80	-1.8
1,481,617	-		CCNA_01365	0.81	+0.9
1,481,637	+		CCNA_01365	0.85	-0.1
1,481,652	-		CCNA_01365	0.88	-0.6
1,481,652	-		CCNA_01365	0.88	+1.3
1,481,671	+				-0.1
1,481,679	-				+0.7
1,481,710	-				+1.9
1,481,726	-				-1.1
1,481,996	-				+1.1
1,482,010	-				-1.8
1,482,021	-				-2.3
1,482,029	+				+0.3
1,482,061	+		CCNA_01366	0.18	-1.1
1,482,061	+		CCNA_01366	0.18	-1.4
1,482,116	-		CCNA_01366	0.43	-1.3
1,482,127	-		CCNA_01366	0.48	+0.4
1,482,167	+		CCNA_01366	0.65	+0.8
1,482,184	-		CCNA_01366	0.73	+0.2
1,482,184	-		CCNA_01366	0.73	-1.6
1,482,193	+		CCNA_01366	0.77	+0.2
1,482,201	-		CCNA_01366	0.80	-0.9
1,482,238	+				-0.3
1,482,253	-				-1.1
1,482,254	-				-0.1
1,482,266	+				+0.3
1,482,274	-				+2.5
1,482,281	+				-0.1
1,482,281	+				-0.1
1,482,290	-				-1.8
1,482,299	+				-0.1
1,482,307	-				-1.7
1,482,316	+				-0.3
1,482,316	+				-0.0
1,482,316	+				-0.1
1,482,346	+				+1.1
1,482,346	+				+1.9
1,482,346	+				+0.6
1,482,346	+				-0.2
1,482,422	-		CCNA_01367	0.10	+0.7
1,482,495	+		CCNA_01367	0.18	+1.9
1,482,502	+		CCNA_01367	0.19	+0.9
1,482,525	+		CCNA_01367	0.22	+0.7
1,482,527	+		CCNA_01367	0.22	-2.3
1,482,533	-		CCNA_01367	0.23	-1.3
1,482,535	-		CCNA_01367	0.23	+0.0
1,482,605	+		CCNA_01367	0.31	-1.1
1,482,619	+		CCNA_01367	0.32	+0.6
1,482,619	+		CCNA_01367	0.32	-0.4
1,482,619	+		CCNA_01367	0.32	+0.5
1,482,619	+		CCNA_01367	0.32	+0.6
1,482,619	+		CCNA_01367	0.32	-0.8
1,482,619	+		CCNA_01367	0.32	-0.1
1,482,627	-		CCNA_01367	0.33	-1.8
1,482,683	-		CCNA_01367	0.40	-1.3
1,482,684	-		CCNA_01367	0.40	-0.6
1,482,684	-		CCNA_01367	0.40	+0.9
1,482,684	-		CCNA_01367	0.40	+0.3