Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15800

Experiment: D-Glucose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15795 and CA265_RS15800 are separated by 48 nucleotidesCA265_RS15800 and CA265_RS15805 are separated by 21 nucleotides CA265_RS15795: CA265_RS15795 - dihydroxy-acid dehydratase, at 3,975,962 to 3,977,644 _RS15795 CA265_RS15800: CA265_RS15800 - DNA-binding protein, at 3,977,693 to 3,978,283 _RS15800 CA265_RS15805: CA265_RS15805 - acetolactate synthase, large subunit, biosynthetic type, at 3,978,305 to 3,980,056 _RS15805 Position (kb) 3977 3978 3979Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3976.799 kb on - strand, within CA265_RS15795at 3976.864 kb on - strand, within CA265_RS15795at 3976.873 kb on - strand, within CA265_RS15795at 3976.873 kb on - strand, within CA265_RS15795at 3976.873 kb on - strand, within CA265_RS15795at 3976.886 kb on - strand, within CA265_RS15795at 3977.074 kb on - strand, within CA265_RS15795at 3977.074 kb on - strand, within CA265_RS15795at 3977.074 kb on - strand, within CA265_RS15795at 3977.193 kb on + strand, within CA265_RS15795at 3977.297 kb on - strand, within CA265_RS15795at 3977.348 kb on - strand, within CA265_RS15795at 3977.348 kb on - strand, within CA265_RS15795at 3977.362 kb on - strand, within CA265_RS15795at 3977.430 kb on - strand, within CA265_RS15795at 3977.455 kb on - strand, within CA265_RS15795at 3977.512 kb on - strandat 3977.563 kb on - strandat 3977.588 kb on - strandat 3977.588 kb on - strandat 3977.588 kb on - strandat 3977.640 kb on - strandat 3977.640 kb on - strandat 3977.677 kb on - strandat 3977.693 kb on - strandat 3977.720 kb on - strandat 3977.818 kb on + strand, within CA265_RS15800at 3977.818 kb on + strand, within CA265_RS15800at 3977.821 kb on + strand, within CA265_RS15800at 3978.062 kb on - strand, within CA265_RS15800at 3978.142 kb on - strand, within CA265_RS15800at 3978.152 kb on - strand, within CA265_RS15800at 3978.238 kb on - strandat 3978.281 kb on + strandat 3978.285 kb on - strandat 3978.300 kb on + strandat 3978.304 kb on + strandat 3978.322 kb on + strandat 3978.327 kb on + strandat 3978.406 kb on - strandat 3978.461 kb on - strandat 3978.461 kb on - strandat 3978.465 kb on - strandat 3978.639 kb on + strand, within CA265_RS15805at 3978.640 kb on - strand, within CA265_RS15805at 3978.688 kb on - strand, within CA265_RS15805at 3978.688 kb on - strand, within CA265_RS15805at 3978.731 kb on - strand, within CA265_RS15805at 3978.997 kb on - strand, within CA265_RS15805at 3979.123 kb on - strand, within CA265_RS15805at 3979.133 kb on - strand, within CA265_RS15805at 3979.142 kb on - strand, within CA265_RS15805at 3979.259 kb on - strand, within CA265_RS15805at 3979.259 kb on - strand, within CA265_RS15805at 3979.264 kb on - strand, within CA265_RS15805

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20mM (C)
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3,976,799 - CA265_RS15795 0.50 -3.3
3,976,864 - CA265_RS15795 0.54 -1.4
3,976,873 - CA265_RS15795 0.54 -2.7
3,976,873 - CA265_RS15795 0.54 -1.8
3,976,873 - CA265_RS15795 0.54 -2.3
3,976,886 - CA265_RS15795 0.55 -2.5
3,977,074 - CA265_RS15795 0.66 -2.8
3,977,074 - CA265_RS15795 0.66 -3.5
3,977,074 - CA265_RS15795 0.66 -1.8
3,977,193 + CA265_RS15795 0.73 -0.1
3,977,297 - CA265_RS15795 0.79 -3.2
3,977,348 - CA265_RS15795 0.82 -4.8
3,977,348 - CA265_RS15795 0.82 -5.5
3,977,362 - CA265_RS15795 0.83 -2.6
3,977,430 - CA265_RS15795 0.87 -2.5
3,977,455 - CA265_RS15795 0.89 -2.5
3,977,512 - -3.6
3,977,563 - -3.3
3,977,588 - -5.4
3,977,588 - -2.8
3,977,588 - -4.3
3,977,640 - -4.2
3,977,640 - -5.1
3,977,677 - -4.3
3,977,693 - -3.4
3,977,720 - -5.6
3,977,818 + CA265_RS15800 0.21 -1.7
3,977,818 + CA265_RS15800 0.21 -2.3
3,977,821 + CA265_RS15800 0.22 -1.6
3,978,062 - CA265_RS15800 0.62 -0.2
3,978,142 - CA265_RS15800 0.76 -3.8
3,978,152 - CA265_RS15800 0.78 -1.8
3,978,238 - -2.6
3,978,281 + -2.7
3,978,285 - -3.8
3,978,300 + -4.8
3,978,304 + -0.7
3,978,322 + +0.2
3,978,327 + -3.1
3,978,406 - -3.5
3,978,461 - -1.7
3,978,461 - -3.5
3,978,465 - -2.3
3,978,639 + CA265_RS15805 0.19 -1.5
3,978,640 - CA265_RS15805 0.19 -4.2
3,978,688 - CA265_RS15805 0.22 -5.1
3,978,688 - CA265_RS15805 0.22 -5.1
3,978,731 - CA265_RS15805 0.24 -1.9
3,978,997 - CA265_RS15805 0.39 -3.4
3,979,123 - CA265_RS15805 0.47 -4.4
3,979,133 - CA265_RS15805 0.47 -4.5
3,979,142 - CA265_RS15805 0.48 -4.0
3,979,259 - CA265_RS15805 0.54 -3.9
3,979,259 - CA265_RS15805 0.54 -3.5
3,979,264 - CA265_RS15805 0.55 -4.9

Or see this region's nucleotide sequence