Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13915

Experiment: Recovery broth with lactate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13905 and BBR_RS13910 overlap by 4 nucleotidesBBR_RS13910 and BBR_RS13915 are separated by 155 nucleotidesBBR_RS13915 and BBR_RS20805 are separated by 366 nucleotides BBR_RS13905: BBR_RS13905 - ornithine carbamoyltransferase, at 899,670 to 900,635 _RS13905 BBR_RS13910: BBR_RS13910 - arginine repressor, at 900,632 to 901,144 _RS13910 BBR_RS13915: BBR_RS13915 - argininosuccinate synthase, at 901,300 to 902,538 _RS13915 BBR_RS20805: BBR_RS20805 - hypothetical protein, at 902,905 to 903,759 _RS20805 Position (kb) 901 902 903Strain fitness (log2 ratio) -2 -1 0 1at 900.310 kb on + strand, within BBR_RS13905at 900.310 kb on + strand, within BBR_RS13905at 900.410 kb on + strand, within BBR_RS13905at 900.418 kb on - strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.425 kb on + strand, within BBR_RS13905at 900.539 kb on + strandat 900.540 kb on + strandat 900.826 kb on + strand, within BBR_RS13910at 900.932 kb on + strand, within BBR_RS13910at 900.985 kb on + strand, within BBR_RS13910at 901.159 kb on + strandat 901.167 kb on - strandat 901.171 kb on + strandat 901.179 kb on - strandat 901.190 kb on - strandat 901.205 kb on + strandat 901.213 kb on - strandat 901.316 kb on + strandat 901.326 kb on + strandat 901.329 kb on - strandat 901.339 kb on + strandat 901.339 kb on - strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.417 kb on + strandat 901.441 kb on - strand, within BBR_RS13915at 901.442 kb on + strand, within BBR_RS13915at 901.442 kb on + strand, within BBR_RS13915at 901.442 kb on - strand, within BBR_RS13915at 901.489 kb on + strand, within BBR_RS13915at 901.539 kb on + strand, within BBR_RS13915at 901.539 kb on + strand, within BBR_RS13915at 901.567 kb on + strand, within BBR_RS13915at 901.573 kb on - strand, within BBR_RS13915at 901.606 kb on + strand, within BBR_RS13915at 901.629 kb on - strand, within BBR_RS13915at 901.676 kb on - strand, within BBR_RS13915at 901.693 kb on + strand, within BBR_RS13915at 901.693 kb on - strand, within BBR_RS13915at 901.719 kb on - strand, within BBR_RS13915at 901.728 kb on - strand, within BBR_RS13915at 901.750 kb on + strand, within BBR_RS13915at 901.774 kb on + strand, within BBR_RS13915at 901.799 kb on + strand, within BBR_RS13915at 901.809 kb on + strand, within BBR_RS13915at 901.839 kb on + strand, within BBR_RS13915at 901.851 kb on - strand, within BBR_RS13915at 901.905 kb on + strand, within BBR_RS13915at 901.905 kb on + strand, within BBR_RS13915at 901.911 kb on + strand, within BBR_RS13915at 901.919 kb on - strand, within BBR_RS13915at 901.940 kb on - strand, within BBR_RS13915at 901.998 kb on - strand, within BBR_RS13915at 902.019 kb on - strand, within BBR_RS13915at 902.021 kb on + strand, within BBR_RS13915at 902.094 kb on - strand, within BBR_RS13915at 902.105 kb on + strand, within BBR_RS13915at 902.115 kb on + strand, within BBR_RS13915at 902.122 kb on + strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.123 kb on - strand, within BBR_RS13915at 902.132 kb on + strand, within BBR_RS13915at 902.137 kb on + strand, within BBR_RS13915at 902.142 kb on + strand, within BBR_RS13915at 902.142 kb on + strand, within BBR_RS13915at 902.161 kb on + strand, within BBR_RS13915at 902.193 kb on - strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.217 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.232 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.326 kb on + strand, within BBR_RS13915at 902.334 kb on - strand, within BBR_RS13915at 902.347 kb on + strand, within BBR_RS13915at 902.362 kb on + strand, within BBR_RS13915at 902.362 kb on + strand, within BBR_RS13915at 902.363 kb on + strand, within BBR_RS13915at 902.422 kb on + strandat 902.451 kb on + strandat 902.507 kb on + strandat 902.554 kb on - strandat 902.567 kb on + strandat 902.575 kb on - strandat 902.599 kb on - strandat 902.601 kb on + strandat 902.604 kb on - strandat 902.604 kb on - strandat 902.609 kb on - strandat 902.609 kb on - strandat 902.618 kb on + strandat 902.755 kb on + strandat 902.821 kb on + strandat 902.834 kb on - strandat 902.893 kb on + strandat 902.906 kb on - strandat 902.933 kb on - strandat 902.949 kb on + strandat 903.006 kb on + strand, within BBR_RS20805at 903.006 kb on + strand, within BBR_RS20805at 903.014 kb on - strand, within BBR_RS20805at 903.014 kb on - strand, within BBR_RS20805at 903.039 kb on - strand, within BBR_RS20805at 903.055 kb on + strand, within BBR_RS20805at 903.084 kb on + strand, within BBR_RS20805at 903.162 kb on - strand, within BBR_RS20805at 903.177 kb on + strand, within BBR_RS20805at 903.313 kb on - strand, within BBR_RS20805at 903.326 kb on - strand, within BBR_RS20805at 903.392 kb on + strand, within BBR_RS20805at 903.400 kb on - strand, within BBR_RS20805

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with lactate 200 mM
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900,310 + BBR_RS13905 0.66 +0.9
900,310 + BBR_RS13905 0.66 -0.5
900,410 + BBR_RS13905 0.77 -0.5
900,418 - BBR_RS13905 0.77 -0.3
900,425 + BBR_RS13905 0.78 -0.1
900,425 + BBR_RS13905 0.78 -0.4
900,539 + -0.1
900,540 + -0.4
900,826 + BBR_RS13910 0.38 -0.3
900,932 + BBR_RS13910 0.58 +0.1
900,985 + BBR_RS13910 0.69 -0.3
901,159 + -0.6
901,167 - -0.2
901,171 + -0.4
901,179 - +0.2
901,190 - +0.2
901,205 + -0.5
901,213 - -0.5
901,316 + +0.8
901,326 + +0.1
901,329 - -0.5
901,339 + +1.3
901,339 - -0.7
901,417 + +0.3
901,417 + -0.6
901,417 + +0.0
901,417 + -0.8
901,417 + +0.6
901,441 - BBR_RS13915 0.11 -0.8
901,442 + BBR_RS13915 0.11 -1.5
901,442 + BBR_RS13915 0.11 -0.7
901,442 - BBR_RS13915 0.11 -0.3
901,489 + BBR_RS13915 0.15 +0.4
901,539 + BBR_RS13915 0.19 +0.3
901,539 + BBR_RS13915 0.19 +0.8
901,567 + BBR_RS13915 0.22 -0.9
901,573 - BBR_RS13915 0.22 +0.0
901,606 + BBR_RS13915 0.25 +0.3
901,629 - BBR_RS13915 0.27 -0.2
901,676 - BBR_RS13915 0.30 +0.4
901,693 + BBR_RS13915 0.32 -0.3
901,693 - BBR_RS13915 0.32 +0.5
901,719 - BBR_RS13915 0.34 -0.0
901,728 - BBR_RS13915 0.35 +0.0
901,750 + BBR_RS13915 0.36 -0.0
901,774 + BBR_RS13915 0.38 -0.0
901,799 + BBR_RS13915 0.40 -1.0
901,809 + BBR_RS13915 0.41 +0.5
901,839 + BBR_RS13915 0.44 +0.9
901,851 - BBR_RS13915 0.44 -0.5
901,905 + BBR_RS13915 0.49 -0.3
901,905 + BBR_RS13915 0.49 +0.8
901,911 + BBR_RS13915 0.49 +0.9
901,919 - BBR_RS13915 0.50 -0.5
901,940 - BBR_RS13915 0.52 -0.2
901,998 - BBR_RS13915 0.56 +0.1
902,019 - BBR_RS13915 0.58 -0.4
902,021 + BBR_RS13915 0.58 +0.0
902,094 - BBR_RS13915 0.64 +0.0
902,105 + BBR_RS13915 0.65 +1.1
902,115 + BBR_RS13915 0.66 +0.3
902,122 + BBR_RS13915 0.66 +0.2
902,123 - BBR_RS13915 0.66 -0.9
902,123 - BBR_RS13915 0.66 -0.0
902,123 - BBR_RS13915 0.66 -1.0
902,123 - BBR_RS13915 0.66 -0.5
902,132 + BBR_RS13915 0.67 -0.1
902,137 + BBR_RS13915 0.68 +0.1
902,142 + BBR_RS13915 0.68 -0.6
902,142 + BBR_RS13915 0.68 -0.4
902,161 + BBR_RS13915 0.69 -0.5
902,193 - BBR_RS13915 0.72 -0.3
902,217 + BBR_RS13915 0.74 -0.5
902,217 + BBR_RS13915 0.74 +0.8
902,217 + BBR_RS13915 0.74 -0.7
902,232 + BBR_RS13915 0.75 +0.2
902,232 + BBR_RS13915 0.75 +0.8
902,232 + BBR_RS13915 0.75 +0.3
902,326 + BBR_RS13915 0.83 -0.1
902,326 + BBR_RS13915 0.83 +0.6
902,326 + BBR_RS13915 0.83 +0.1
902,326 + BBR_RS13915 0.83 -0.1
902,326 + BBR_RS13915 0.83 +0.2
902,334 - BBR_RS13915 0.83 +0.3
902,347 + BBR_RS13915 0.85 -0.2
902,362 + BBR_RS13915 0.86 -0.1
902,362 + BBR_RS13915 0.86 +0.3
902,363 + BBR_RS13915 0.86 +0.7
902,422 + -0.0
902,451 + -0.3
902,507 + +1.0
902,554 - +0.0
902,567 + +1.6
902,575 - -0.5
902,599 - +0.6
902,601 + -0.3
902,604 - -1.6
902,604 - -0.2
902,609 - +0.0
902,609 - +0.1
902,618 + +0.1
902,755 + -0.6
902,821 + +0.6
902,834 - +0.2
902,893 + -0.4
902,906 - -0.1
902,933 - +0.2
902,949 + -0.3
903,006 + BBR_RS20805 0.12 +0.3
903,006 + BBR_RS20805 0.12 +0.3
903,014 - BBR_RS20805 0.13 +0.0
903,014 - BBR_RS20805 0.13 +0.2
903,039 - BBR_RS20805 0.16 +0.9
903,055 + BBR_RS20805 0.18 -0.7
903,084 + BBR_RS20805 0.21 +0.6
903,162 - BBR_RS20805 0.30 -0.1
903,177 + BBR_RS20805 0.32 -0.1
903,313 - BBR_RS20805 0.48 +0.7
903,326 - BBR_RS20805 0.49 -0.4
903,392 + BBR_RS20805 0.57 +0.2
903,400 - BBR_RS20805 0.58 -2.7

Or see this region's nucleotide sequence