Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29450 and AO356_29455 are separated by 176 nucleotides AO356_29455 and AO356_29460 are separated by 39 nucleotides AO356_29460 and AO356_29465 are separated by 112 nucleotides
AO356_29450: AO356_29450 - ornithine cyclodeaminase, at 6,852,460 to 6,853,515
_29450
AO356_29455: AO356_29455 - amino acid transporter, at 6,853,692 to 6,855,146
_29455
AO356_29460: AO356_29460 - hypothetical protein, at 6,855,186 to 6,855,722
_29460
AO356_29465: AO356_29465 - thiamine biosynthesis protein ThiJ, at 6,855,835 to 6,856,461
_29465
Position (kb)
6853
6854
6855
6856 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6853.078 kb on + strand, within AO356_29450 at 6853.078 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.122 kb on + strand, within AO356_29450 at 6853.123 kb on - strand, within AO356_29450 at 6853.123 kb on - strand, within AO356_29450 at 6853.123 kb on - strand, within AO356_29450 at 6853.133 kb on + strand, within AO356_29450 at 6853.133 kb on + strand, within AO356_29450 at 6853.134 kb on - strand, within AO356_29450 at 6853.376 kb on - strand, within AO356_29450 at 6853.376 kb on - strand, within AO356_29450 at 6853.376 kb on - strand, within AO356_29450 at 6853.446 kb on - strand at 6853.457 kb on - strand at 6853.522 kb on + strand at 6853.522 kb on + strand at 6853.523 kb on - strand at 6853.523 kb on - strand at 6853.634 kb on - strand at 6853.766 kb on - strand at 6853.766 kb on - strand at 6853.855 kb on - strand, within AO356_29455 at 6853.855 kb on - strand, within AO356_29455 at 6853.957 kb on - strand, within AO356_29455 at 6853.996 kb on - strand, within AO356_29455 at 6854.058 kb on + strand, within AO356_29455 at 6854.099 kb on + strand, within AO356_29455 at 6854.156 kb on - strand, within AO356_29455 at 6854.156 kb on - strand, within AO356_29455 at 6854.455 kb on - strand, within AO356_29455 at 6854.455 kb on - strand, within AO356_29455 at 6854.699 kb on + strand, within AO356_29455 at 6854.700 kb on - strand, within AO356_29455 at 6854.737 kb on + strand, within AO356_29455 at 6854.738 kb on - strand, within AO356_29455 at 6854.804 kb on + strand, within AO356_29455 at 6854.810 kb on - strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.856 kb on + strand, within AO356_29455 at 6854.857 kb on - strand, within AO356_29455 at 6854.857 kb on - strand, within AO356_29455 at 6854.996 kb on + strand, within AO356_29455 at 6854.996 kb on + strand, within AO356_29455 at 6854.997 kb on - strand, within AO356_29455 at 6855.098 kb on + strand at 6855.145 kb on - strand at 6855.286 kb on + strand, within AO356_29460 at 6855.286 kb on + strand, within AO356_29460 at 6855.286 kb on + strand, within AO356_29460 at 6855.442 kb on + strand, within AO356_29460 at 6855.443 kb on - strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.655 kb on + strand, within AO356_29460 at 6855.742 kb on + strand at 6855.797 kb on + strand at 6855.798 kb on - strand at 6855.798 kb on - strand at 6855.905 kb on + strand, within AO356_29465 at 6855.905 kb on + strand, within AO356_29465 at 6855.905 kb on + strand, within AO356_29465 at 6855.906 kb on - strand, within AO356_29465 at 6855.906 kb on - strand, within AO356_29465 at 6856.046 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465 at 6856.111 kb on - strand, within AO356_29465
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 6,853,078 + AO356_29450 0.59 -0.0 6,853,078 + AO356_29450 0.59 -1.1 6,853,122 + AO356_29450 0.63 -0.7 6,853,122 + AO356_29450 0.63 +1.7 6,853,122 + AO356_29450 0.63 -0.3 6,853,122 + AO356_29450 0.63 -1.1 6,853,122 + AO356_29450 0.63 +0.2 6,853,122 + AO356_29450 0.63 +1.0 6,853,123 - AO356_29450 0.63 -0.9 6,853,123 - AO356_29450 0.63 -0.3 6,853,123 - AO356_29450 0.63 -0.4 6,853,133 + AO356_29450 0.64 +0.4 6,853,133 + AO356_29450 0.64 +0.7 6,853,134 - AO356_29450 0.64 +0.5 6,853,376 - AO356_29450 0.87 +0.4 6,853,376 - AO356_29450 0.87 -0.2 6,853,376 - AO356_29450 0.87 -0.2 6,853,446 - -1.4 6,853,457 - +0.1 6,853,522 + +2.7 6,853,522 + -1.9 6,853,523 - +0.1 6,853,523 - +0.1 6,853,634 - -0.2 6,853,766 - -0.9 6,853,766 - -0.3 6,853,855 - AO356_29455 0.11 -0.5 6,853,855 - AO356_29455 0.11 +1.3 6,853,957 - AO356_29455 0.18 -1.3 6,853,996 - AO356_29455 0.21 -0.4 6,854,058 + AO356_29455 0.25 +0.8 6,854,099 + AO356_29455 0.28 +1.4 6,854,156 - AO356_29455 0.32 +0.5 6,854,156 - AO356_29455 0.32 -0.8 6,854,455 - AO356_29455 0.52 -0.1 6,854,455 - AO356_29455 0.52 +0.7 6,854,699 + AO356_29455 0.69 -0.5 6,854,700 - AO356_29455 0.69 -0.3 6,854,737 + AO356_29455 0.72 +1.1 6,854,738 - AO356_29455 0.72 +1.4 6,854,804 + AO356_29455 0.76 +1.1 6,854,810 - AO356_29455 0.77 -0.1 6,854,856 + AO356_29455 0.80 -0.7 6,854,856 + AO356_29455 0.80 +0.5 6,854,856 + AO356_29455 0.80 -0.5 6,854,857 - AO356_29455 0.80 +0.1 6,854,857 - AO356_29455 0.80 +0.4 6,854,996 + AO356_29455 0.90 -0.7 6,854,996 + AO356_29455 0.90 -0.1 6,854,997 - AO356_29455 0.90 -0.4 6,855,098 + -0.8 6,855,145 - +0.2 6,855,286 + AO356_29460 0.19 -0.9 6,855,286 + AO356_29460 0.19 -0.6 6,855,286 + AO356_29460 0.19 -0.8 6,855,442 + AO356_29460 0.48 -0.1 6,855,443 - AO356_29460 0.48 -0.2 6,855,655 + AO356_29460 0.87 -0.4 6,855,655 + AO356_29460 0.87 +0.7 6,855,655 + AO356_29460 0.87 -0.9 6,855,742 + +2.0 6,855,797 + +0.7 6,855,798 - -0.2 6,855,798 - -2.9 6,855,905 + AO356_29465 0.11 -0.5 6,855,905 + AO356_29465 0.11 +0.0 6,855,905 + AO356_29465 0.11 +0.2 6,855,906 - AO356_29465 0.11 +0.9 6,855,906 - AO356_29465 0.11 +0.4 6,856,046 - AO356_29465 0.34 -0.1 6,856,111 - AO356_29465 0.44 -0.0 6,856,111 - AO356_29465 0.44 -0.2 6,856,111 - AO356_29465 0.44 +0.1
Or see this region's nucleotide sequence