Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29080

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29075 and AO356_29080 are separated by 26 nucleotidesAO356_29080 and AO356_29085 are separated by 99 nucleotides AO356_29075: AO356_29075 - dihydrodipicolinate synthetase, at 6,760,903 to 6,761,919 _29075 AO356_29080: AO356_29080 - ornithine cyclodeaminase, at 6,761,946 to 6,762,956 _29080 AO356_29085: AO356_29085 - LysR family transcriptional regulator, at 6,763,056 to 6,763,982 _29085 Position (kb) 6761 6762 6763Strain fitness (log2 ratio) -1 0 1 2at 6761.066 kb on + strand, within AO356_29075at 6761.108 kb on + strand, within AO356_29075at 6761.337 kb on - strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.531 kb on + strand, within AO356_29075at 6761.947 kb on + strandat 6762.014 kb on - strandat 6762.209 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.506 kb on + strand, within AO356_29080at 6762.691 kb on + strand, within AO356_29080at 6762.740 kb on + strand, within AO356_29080at 6762.957 kb on - strandat 6763.050 kb on + strandat 6763.051 kb on - strandat 6763.215 kb on + strand, within AO356_29085at 6763.656 kb on + strand, within AO356_29085at 6763.739 kb on + strand, within AO356_29085at 6763.739 kb on + strand, within AO356_29085at 6763.740 kb on - strand, within AO356_29085

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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6,761,066 + AO356_29075 0.16 +0.6
6,761,108 + AO356_29075 0.20 +1.0
6,761,337 - AO356_29075 0.43 -1.0
6,761,531 + AO356_29075 0.62 +0.1
6,761,531 + AO356_29075 0.62 +0.1
6,761,531 + AO356_29075 0.62 +0.3
6,761,947 + -0.0
6,762,014 - -0.1
6,762,209 + AO356_29080 0.26 +0.2
6,762,506 + AO356_29080 0.55 -0.7
6,762,506 + AO356_29080 0.55 +1.4
6,762,691 + AO356_29080 0.74 -0.3
6,762,740 + AO356_29080 0.79 +2.0
6,762,957 - +0.3
6,763,050 + +0.2
6,763,051 - -0.1
6,763,215 + AO356_29085 0.17 +0.8
6,763,656 + AO356_29085 0.65 +0.5
6,763,739 + AO356_29085 0.74 +0.5
6,763,739 + AO356_29085 0.74 -0.7
6,763,740 - AO356_29085 0.74 +0.7

Or see this region's nucleotide sequence