Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28870

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28865 and AO356_28870 are separated by 30 nucleotidesAO356_28870 and AO356_28875 are separated by 287 nucleotides AO356_28865: AO356_28865 - histidine kinase, at 6,712,780 to 6,714,174 _28865 AO356_28870: AO356_28870 - MFS transporter, at 6,714,205 to 6,715,479 _28870 AO356_28875: AO356_28875 - porin, at 6,715,767 to 6,717,020 _28875 Position (kb) 6714 6715 6716Strain fitness (log2 ratio) -2 -1 0 1at 6713.353 kb on + strand, within AO356_28865at 6713.353 kb on + strand, within AO356_28865at 6713.353 kb on + strand, within AO356_28865at 6713.354 kb on - strand, within AO356_28865at 6713.354 kb on - strand, within AO356_28865at 6713.370 kb on + strand, within AO356_28865at 6713.457 kb on - strand, within AO356_28865at 6713.711 kb on - strand, within AO356_28865at 6713.713 kb on - strand, within AO356_28865at 6713.713 kb on - strand, within AO356_28865at 6713.761 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.765 kb on + strand, within AO356_28865at 6713.766 kb on - strand, within AO356_28865at 6713.766 kb on - strand, within AO356_28865at 6713.792 kb on + strand, within AO356_28865at 6713.793 kb on - strand, within AO356_28865at 6713.793 kb on - strand, within AO356_28865at 6714.536 kb on + strand, within AO356_28870at 6714.557 kb on + strand, within AO356_28870at 6714.557 kb on + strand, within AO356_28870at 6714.558 kb on - strand, within AO356_28870at 6714.558 kb on - strand, within AO356_28870at 6714.681 kb on + strand, within AO356_28870at 6714.682 kb on - strand, within AO356_28870at 6714.682 kb on - strand, within AO356_28870at 6714.682 kb on - strand, within AO356_28870at 6714.682 kb on - strand, within AO356_28870at 6714.807 kb on + strand, within AO356_28870at 6714.807 kb on + strand, within AO356_28870at 6714.808 kb on - strand, within AO356_28870at 6714.808 kb on - strand, within AO356_28870at 6714.959 kb on + strand, within AO356_28870at 6714.960 kb on - strand, within AO356_28870at 6715.066 kb on - strand, within AO356_28870at 6715.066 kb on - strand, within AO356_28870at 6715.189 kb on + strand, within AO356_28870at 6715.361 kb on + strandat 6715.361 kb on + strandat 6715.729 kb on - strandat 6715.729 kb on - strandat 6715.751 kb on - strandat 6715.768 kb on + strandat 6715.768 kb on + strandat 6715.791 kb on - strandat 6715.791 kb on - strandat 6715.791 kb on - strandat 6715.795 kb on + strandat 6715.795 kb on + strandat 6715.796 kb on - strandat 6715.843 kb on + strandat 6715.843 kb on + strandat 6715.894 kb on + strand, within AO356_28875at 6715.963 kb on + strand, within AO356_28875at 6716.084 kb on - strand, within AO356_28875at 6716.104 kb on + strand, within AO356_28875at 6716.105 kb on - strand, within AO356_28875at 6716.171 kb on - strand, within AO356_28875at 6716.171 kb on - strand, within AO356_28875at 6716.245 kb on + strand, within AO356_28875at 6716.338 kb on + strand, within AO356_28875at 6716.339 kb on - strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.344 kb on + strand, within AO356_28875at 6716.345 kb on - strand, within AO356_28875at 6716.375 kb on - strand, within AO356_28875at 6716.375 kb on - strand, within AO356_28875at 6716.389 kb on + strand, within AO356_28875at 6716.389 kb on + strand, within AO356_28875

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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6,713,353 + AO356_28865 0.41 -1.1
6,713,353 + AO356_28865 0.41 -0.3
6,713,353 + AO356_28865 0.41 -0.0
6,713,354 - AO356_28865 0.41 +0.1
6,713,354 - AO356_28865 0.41 +0.9
6,713,370 + AO356_28865 0.42 -0.6
6,713,457 - AO356_28865 0.49 +0.3
6,713,711 - AO356_28865 0.67 -1.2
6,713,713 - AO356_28865 0.67 -0.9
6,713,713 - AO356_28865 0.67 -0.2
6,713,761 + AO356_28865 0.70 +0.1
6,713,765 + AO356_28865 0.71 -0.0
6,713,765 + AO356_28865 0.71 -0.3
6,713,765 + AO356_28865 0.71 -2.5
6,713,766 - AO356_28865 0.71 +0.2
6,713,766 - AO356_28865 0.71 +0.2
6,713,792 + AO356_28865 0.73 -0.9
6,713,793 - AO356_28865 0.73 -0.1
6,713,793 - AO356_28865 0.73 +0.1
6,714,536 + AO356_28870 0.26 -0.2
6,714,557 + AO356_28870 0.28 -0.4
6,714,557 + AO356_28870 0.28 -0.2
6,714,558 - AO356_28870 0.28 -1.7
6,714,558 - AO356_28870 0.28 -0.9
6,714,681 + AO356_28870 0.37 +0.2
6,714,682 - AO356_28870 0.37 -0.6
6,714,682 - AO356_28870 0.37 -0.5
6,714,682 - AO356_28870 0.37 +0.4
6,714,682 - AO356_28870 0.37 -1.2
6,714,807 + AO356_28870 0.47 +0.4
6,714,807 + AO356_28870 0.47 +0.4
6,714,808 - AO356_28870 0.47 +1.3
6,714,808 - AO356_28870 0.47 +0.6
6,714,959 + AO356_28870 0.59 -0.7
6,714,960 - AO356_28870 0.59 +0.1
6,715,066 - AO356_28870 0.68 +0.2
6,715,066 - AO356_28870 0.68 -1.1
6,715,189 + AO356_28870 0.77 -0.8
6,715,361 + -1.1
6,715,361 + +0.1
6,715,729 - -1.0
6,715,729 - +1.0
6,715,751 - +0.0
6,715,768 + -0.1
6,715,768 + +0.1
6,715,791 - -1.0
6,715,791 - -0.3
6,715,791 - -0.3
6,715,795 + +1.3
6,715,795 + -0.4
6,715,796 - +0.9
6,715,843 + -2.0
6,715,843 + -0.3
6,715,894 + AO356_28875 0.10 -0.3
6,715,963 + AO356_28875 0.16 +0.3
6,716,084 - AO356_28875 0.25 -0.8
6,716,104 + AO356_28875 0.27 +1.0
6,716,105 - AO356_28875 0.27 +0.6
6,716,171 - AO356_28875 0.32 +0.9
6,716,171 - AO356_28875 0.32 +0.2
6,716,245 + AO356_28875 0.38 -0.1
6,716,338 + AO356_28875 0.46 -0.3
6,716,339 - AO356_28875 0.46 -0.0
6,716,344 + AO356_28875 0.46 +0.5
6,716,344 + AO356_28875 0.46 +0.7
6,716,344 + AO356_28875 0.46 +0.5
6,716,345 - AO356_28875 0.46 -0.2
6,716,375 - AO356_28875 0.48 -1.5
6,716,375 - AO356_28875 0.48 +0.1
6,716,389 + AO356_28875 0.50 +0.2
6,716,389 + AO356_28875 0.50 -1.3

Or see this region's nucleotide sequence