Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_27565

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_27560 and AO356_27565 are separated by 219 nucleotidesAO356_27565 and AO356_27570 are separated by 135 nucleotidesAO356_27570 and AO356_27575 are separated by 56 nucleotides AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695 _27560 AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378 _27565 AO356_27570: AO356_27570 - short-chain dehydrogenase, at 6,290,514 to 6,291,299 _27570 AO356_27575: AO356_27575 - Long-chain fatty acid transport protein, at 6,291,356 to 6,292,627 _27575 Position (kb) 6288 6289 6290 6291Strain fitness (log2 ratio) -3 -2 -1 0 1at 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.923 kb on + strand, within AO356_27560at 6287.924 kb on - strand, within AO356_27560at 6287.924 kb on - strand, within AO356_27560at 6288.011 kb on - strand, within AO356_27560at 6288.570 kb on + strand, within AO356_27560at 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.695 kb on + strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.696 kb on - strandat 6288.707 kb on - strandat 6288.707 kb on - strandat 6288.806 kb on + strandat 6288.828 kb on - strandat 6289.306 kb on - strand, within AO356_27565at 6289.322 kb on + strand, within AO356_27565at 6289.322 kb on + strand, within AO356_27565at 6289.323 kb on - strand, within AO356_27565at 6289.326 kb on + strand, within AO356_27565at 6289.473 kb on + strand, within AO356_27565at 6289.473 kb on + strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.474 kb on - strand, within AO356_27565at 6289.566 kb on + strand, within AO356_27565at 6289.872 kb on + strand, within AO356_27565at 6289.873 kb on - strand, within AO356_27565at 6289.873 kb on - strand, within AO356_27565at 6290.514 kb on - strandat 6290.589 kb on + strandat 6290.590 kb on - strandat 6290.760 kb on - strand, within AO356_27570at 6290.760 kb on - strand, within AO356_27570at 6290.859 kb on - strand, within AO356_27570at 6290.952 kb on + strand, within AO356_27570at 6290.997 kb on + strand, within AO356_27570at 6290.997 kb on + strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6290.998 kb on - strand, within AO356_27570at 6291.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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6,287,923 + AO356_27560 0.30 -1.4
6,287,923 + AO356_27560 0.30 -0.3
6,287,923 + AO356_27560 0.30 -0.8
6,287,923 + AO356_27560 0.30 +0.5
6,287,924 - AO356_27560 0.30 -0.3
6,287,924 - AO356_27560 0.30 -0.3
6,288,011 - AO356_27560 0.38 -0.6
6,288,570 + AO356_27560 0.89 +0.7
6,288,695 + -1.2
6,288,695 + +0.9
6,288,695 + +0.4
6,288,695 + -0.3
6,288,695 + +1.0
6,288,696 - -0.6
6,288,696 - -0.3
6,288,696 - -0.6
6,288,696 - -0.6
6,288,696 - +0.2
6,288,707 - -1.1
6,288,707 - +0.7
6,288,806 + -1.2
6,288,828 - -0.0
6,289,306 - AO356_27565 0.27 -1.8
6,289,322 + AO356_27565 0.28 +0.3
6,289,322 + AO356_27565 0.28 -0.7
6,289,323 - AO356_27565 0.28 +0.5
6,289,326 + AO356_27565 0.28 +1.0
6,289,473 + AO356_27565 0.38 -1.2
6,289,473 + AO356_27565 0.38 +1.2
6,289,474 - AO356_27565 0.38 +1.0
6,289,474 - AO356_27565 0.38 +0.4
6,289,474 - AO356_27565 0.38 +0.3
6,289,566 + AO356_27565 0.44 +0.5
6,289,872 + AO356_27565 0.65 -0.1
6,289,873 - AO356_27565 0.65 +0.4
6,289,873 - AO356_27565 0.65 -0.0
6,290,514 - +0.4
6,290,589 + +1.2
6,290,590 - +0.2
6,290,760 - AO356_27570 0.31 -0.3
6,290,760 - AO356_27570 0.31 +1.0
6,290,859 - AO356_27570 0.44 -0.5
6,290,952 + AO356_27570 0.56 -2.8
6,290,997 + AO356_27570 0.61 +0.0
6,290,997 + AO356_27570 0.61 -0.8
6,290,998 - AO356_27570 0.62 -0.3
6,290,998 - AO356_27570 0.62 -1.8
6,290,998 - AO356_27570 0.62 +0.8
6,290,998 - AO356_27570 0.62 -0.3
6,290,998 - AO356_27570 0.62 -0.4
6,291,358 - -0.8

Or see this region's nucleotide sequence