Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27355 and AO356_27360 are separated by 76 nucleotides AO356_27360 and AO356_27365 are separated by 19 nucleotides AO356_27365 and AO356_27370 overlap by 4 nucleotides
AO356_27355: AO356_27355 - amidase, at 6,234,006 to 6,235,520
_27355
AO356_27360: AO356_27360 - nitrile hydratase subunit alpha, at 6,235,597 to 6,236,253
_27360
AO356_27365: AO356_27365 - nitrile hydratase subunit beta, at 6,236,273 to 6,236,926
_27365
AO356_27370: AO356_27370 - nitrile hydratase, at 6,236,923 to 6,237,363
_27370
Position (kb)
6235
6236
6237 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6234.635 kb on + strand, within AO356_27355 at 6234.654 kb on + strand, within AO356_27355 at 6235.062 kb on + strand, within AO356_27355 at 6235.062 kb on + strand, within AO356_27355 at 6235.063 kb on - strand, within AO356_27355 at 6235.063 kb on - strand, within AO356_27355 at 6235.063 kb on - strand, within AO356_27355 at 6235.182 kb on + strand, within AO356_27355 at 6235.249 kb on - strand, within AO356_27355 at 6235.452 kb on + strand at 6235.453 kb on - strand at 6235.518 kb on + strand at 6235.557 kb on + strand at 6235.557 kb on + strand at 6235.557 kb on + strand at 6235.606 kb on - strand at 6235.765 kb on + strand, within AO356_27360 at 6235.766 kb on - strand, within AO356_27360 at 6235.831 kb on + strand, within AO356_27360 at 6236.284 kb on - strand at 6236.300 kb on - strand at 6236.459 kb on + strand, within AO356_27365 at 6236.459 kb on + strand, within AO356_27365 at 6236.460 kb on - strand, within AO356_27365 at 6236.832 kb on - strand, within AO356_27365 at 6236.832 kb on - strand, within AO356_27365 at 6236.832 kb on - strand, within AO356_27365 at 6236.909 kb on + strand at 6236.910 kb on - strand at 6236.910 kb on - strand at 6236.922 kb on + strand at 6237.136 kb on + strand, within AO356_27370 at 6237.137 kb on - strand, within AO356_27370 at 6237.137 kb on - strand, within AO356_27370 at 6237.137 kb on - strand, within AO356_27370 at 6237.238 kb on + strand, within AO356_27370
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 6,234,635 + AO356_27355 0.42 +1.8 6,234,654 + AO356_27355 0.43 -1.1 6,235,062 + AO356_27355 0.70 -0.5 6,235,062 + AO356_27355 0.70 +1.4 6,235,063 - AO356_27355 0.70 +0.7 6,235,063 - AO356_27355 0.70 +0.4 6,235,063 - AO356_27355 0.70 -0.6 6,235,182 + AO356_27355 0.78 -0.5 6,235,249 - AO356_27355 0.82 -0.4 6,235,452 + -1.8 6,235,453 - +1.8 6,235,518 + -0.8 6,235,557 + -0.4 6,235,557 + -1.1 6,235,557 + -1.4 6,235,606 - -1.0 6,235,765 + AO356_27360 0.26 -0.3 6,235,766 - AO356_27360 0.26 -0.6 6,235,831 + AO356_27360 0.36 -1.2 6,236,284 - +0.6 6,236,300 - -0.7 6,236,459 + AO356_27365 0.28 +0.2 6,236,459 + AO356_27365 0.28 +1.2 6,236,460 - AO356_27365 0.29 +0.9 6,236,832 - AO356_27365 0.85 +0.8 6,236,832 - AO356_27365 0.85 +1.9 6,236,832 - AO356_27365 0.85 +1.7 6,236,909 + -0.6 6,236,910 - +0.4 6,236,910 - +0.8 6,236,922 + +0.0 6,237,136 + AO356_27370 0.48 -1.8 6,237,137 - AO356_27370 0.49 -0.3 6,237,137 - AO356_27370 0.49 -0.4 6,237,137 - AO356_27370 0.49 +0.2 6,237,238 + AO356_27370 0.71 -0.1
Or see this region's nucleotide sequence