Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25720

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25715 and AO356_25720 are separated by 17 nucleotidesAO356_25720 and AO356_25725 are separated by 6 nucleotidesAO356_25725 and AO356_25730 overlap by 4 nucleotides AO356_25715: AO356_25715 - branched-chain amino acid ABC transporter substrate-binding protein, at 5,816,657 to 5,817,808 _25715 AO356_25720: AO356_25720 - polyamine ABC transporter permease, at 5,817,826 to 5,818,635 _25720 AO356_25725: AO356_25725 - ABC transporter permease, at 5,818,642 to 5,819,571 _25725 AO356_25730: AO356_25730 - ABC transporter substrate-binding protein, at 5,819,568 to 5,820,593 _25730 Position (kb) 5817 5818 5819Strain fitness (log2 ratio) -2 -1 0 1at 5817.109 kb on - strand, within AO356_25715at 5817.324 kb on + strand, within AO356_25715at 5817.563 kb on + strand, within AO356_25715at 5818.259 kb on + strand, within AO356_25720at 5818.260 kb on - strand, within AO356_25720at 5818.260 kb on - strand, within AO356_25720at 5818.691 kb on + strandat 5818.692 kb on - strandat 5818.692 kb on - strandat 5818.697 kb on + strandat 5818.697 kb on + strandat 5818.698 kb on - strandat 5818.838 kb on + strand, within AO356_25725at 5818.842 kb on - strand, within AO356_25725at 5819.027 kb on + strand, within AO356_25725at 5819.027 kb on + strand, within AO356_25725at 5819.027 kb on + strand, within AO356_25725at 5819.027 kb on + strand, within AO356_25725at 5819.028 kb on - strand, within AO356_25725at 5819.028 kb on - strand, within AO356_25725at 5819.150 kb on + strand, within AO356_25725at 5819.150 kb on + strand, within AO356_25725at 5819.151 kb on - strand, within AO356_25725at 5819.151 kb on - strand, within AO356_25725at 5819.309 kb on - strand, within AO356_25725at 5819.321 kb on + strand, within AO356_25725at 5819.321 kb on + strand, within AO356_25725at 5819.349 kb on - strand, within AO356_25725at 5819.349 kb on - strand, within AO356_25725

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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5,817,109 - AO356_25715 0.39 -0.5
5,817,324 + AO356_25715 0.58 -0.7
5,817,563 + AO356_25715 0.79 +0.4
5,818,259 + AO356_25720 0.53 -0.6
5,818,260 - AO356_25720 0.54 +0.5
5,818,260 - AO356_25720 0.54 -1.9
5,818,691 + +1.0
5,818,692 - +1.1
5,818,692 - +0.5
5,818,697 + -0.7
5,818,697 + -0.9
5,818,698 - +0.3
5,818,838 + AO356_25725 0.21 +0.6
5,818,842 - AO356_25725 0.22 +0.3
5,819,027 + AO356_25725 0.41 +1.0
5,819,027 + AO356_25725 0.41 -0.3
5,819,027 + AO356_25725 0.41 -0.6
5,819,027 + AO356_25725 0.41 +0.9
5,819,028 - AO356_25725 0.42 -0.1
5,819,028 - AO356_25725 0.42 +0.4
5,819,150 + AO356_25725 0.55 +0.0
5,819,150 + AO356_25725 0.55 +0.1
5,819,151 - AO356_25725 0.55 +0.7
5,819,151 - AO356_25725 0.55 +1.6
5,819,309 - AO356_25725 0.72 +0.8
5,819,321 + AO356_25725 0.73 -1.4
5,819,321 + AO356_25725 0.73 -1.2
5,819,349 - AO356_25725 0.76 +0.5
5,819,349 - AO356_25725 0.76 -0.4

Or see this region's nucleotide sequence