Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25005 and AO356_25010 are separated by 90 nucleotides AO356_25010 and AO356_25015 overlap by 4 nucleotides
AO356_25005: AO356_25005 - LysR family transcriptional regulator, at 5,664,679 to 5,665,575
_25005
AO356_25010: AO356_25010 - MFS transporter, at 5,665,666 to 5,667,081
_25010
AO356_25015: AO356_25015 - glucarate dehydratase, at 5,667,078 to 5,668,352
_25015
Position (kb)
5665
5666
5667
5668 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5664.726 kb on + strand at 5664.727 kb on - strand at 5664.992 kb on + strand, within AO356_25005 at 5664.993 kb on - strand, within AO356_25005 at 5665.110 kb on - strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.184 kb on + strand, within AO356_25005 at 5665.185 kb on - strand, within AO356_25005 at 5665.185 kb on - strand, within AO356_25005 at 5665.689 kb on + strand at 5665.694 kb on + strand at 5665.695 kb on - strand at 5665.754 kb on + strand at 5665.755 kb on - strand at 5665.789 kb on + strand at 5665.789 kb on + strand at 5665.789 kb on + strand at 5665.790 kb on - strand at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.026 kb on + strand, within AO356_25010 at 5666.027 kb on - strand, within AO356_25010 at 5666.027 kb on - strand, within AO356_25010 at 5666.083 kb on + strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.084 kb on - strand, within AO356_25010 at 5666.086 kb on + strand, within AO356_25010 at 5666.087 kb on - strand, within AO356_25010 at 5666.455 kb on + strand, within AO356_25010 at 5666.455 kb on + strand, within AO356_25010 at 5666.456 kb on - strand, within AO356_25010 at 5666.479 kb on + strand, within AO356_25010 at 5666.480 kb on - strand, within AO356_25010 at 5666.480 kb on - strand, within AO356_25010 at 5666.908 kb on + strand, within AO356_25010 at 5666.909 kb on - strand, within AO356_25010 at 5667.077 kb on + strand at 5667.078 kb on - strand at 5667.078 kb on - strand at 5667.078 kb on - strand at 5667.201 kb on + strand at 5667.201 kb on + strand at 5667.201 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.205 kb on + strand at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.206 kb on - strand, within AO356_25015 at 5667.222 kb on + strand, within AO356_25015 at 5667.222 kb on + strand, within AO356_25015 at 5667.408 kb on + strand, within AO356_25015 at 5667.450 kb on + strand, within AO356_25015 at 5667.451 kb on - strand, within AO356_25015 at 5667.517 kb on - strand, within AO356_25015 at 5667.531 kb on + strand, within AO356_25015 at 5667.531 kb on + strand, within AO356_25015 at 5667.532 kb on - strand, within AO356_25015 at 5667.807 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.810 kb on + strand, within AO356_25015 at 5667.811 kb on - strand, within AO356_25015 at 5667.884 kb on + strand, within AO356_25015 at 5667.885 kb on - strand, within AO356_25015
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 5,664,726 + -1.6 5,664,727 - -0.6 5,664,992 + AO356_25005 0.35 +1.1 5,664,993 - AO356_25005 0.35 -0.3 5,665,110 - AO356_25005 0.48 +0.8 5,665,184 + AO356_25005 0.56 +0.4 5,665,184 + AO356_25005 0.56 +1.2 5,665,184 + AO356_25005 0.56 +1.2 5,665,184 + AO356_25005 0.56 +1.4 5,665,185 - AO356_25005 0.56 -0.1 5,665,185 - AO356_25005 0.56 -1.3 5,665,689 + -0.7 5,665,694 + +0.1 5,665,695 - +0.2 5,665,754 + -0.8 5,665,755 - -0.5 5,665,789 + -0.6 5,665,789 + -2.2 5,665,789 + -0.1 5,665,790 - +1.4 5,666,026 + AO356_25010 0.25 +1.0 5,666,026 + AO356_25010 0.25 -0.8 5,666,026 + AO356_25010 0.25 +0.3 5,666,026 + AO356_25010 0.25 -0.2 5,666,026 + AO356_25010 0.25 -1.9 5,666,027 - AO356_25010 0.25 +1.1 5,666,027 - AO356_25010 0.25 +2.1 5,666,083 + AO356_25010 0.29 -0.6 5,666,084 - AO356_25010 0.30 +0.7 5,666,084 - AO356_25010 0.30 -1.7 5,666,084 - AO356_25010 0.30 -0.0 5,666,086 + AO356_25010 0.30 +0.6 5,666,087 - AO356_25010 0.30 -0.6 5,666,455 + AO356_25010 0.56 +2.7 5,666,455 + AO356_25010 0.56 -0.8 5,666,456 - AO356_25010 0.56 -1.5 5,666,479 + AO356_25010 0.57 -0.4 5,666,480 - AO356_25010 0.57 -0.3 5,666,480 - AO356_25010 0.57 +0.8 5,666,908 + AO356_25010 0.88 +0.1 5,666,909 - AO356_25010 0.88 -0.3 5,667,077 + +1.4 5,667,078 - +0.8 5,667,078 - -1.2 5,667,078 - +1.5 5,667,201 + -0.2 5,667,201 + -0.7 5,667,201 + +0.9 5,667,205 + +0.6 5,667,205 + +0.3 5,667,205 + +0.7 5,667,205 + +0.6 5,667,205 + +0.7 5,667,205 + +0.9 5,667,205 + +0.6 5,667,205 + +0.0 5,667,206 - AO356_25015 0.10 -1.0 5,667,206 - AO356_25015 0.10 -1.0 5,667,206 - AO356_25015 0.10 -0.5 5,667,206 - AO356_25015 0.10 -0.7 5,667,206 - AO356_25015 0.10 -1.6 5,667,222 + AO356_25015 0.11 +1.5 5,667,222 + AO356_25015 0.11 +0.8 5,667,408 + AO356_25015 0.26 -0.8 5,667,450 + AO356_25015 0.29 +0.3 5,667,451 - AO356_25015 0.29 +0.5 5,667,517 - AO356_25015 0.34 +1.1 5,667,531 + AO356_25015 0.36 +0.6 5,667,531 + AO356_25015 0.36 -0.6 5,667,532 - AO356_25015 0.36 -0.5 5,667,807 + AO356_25015 0.57 -0.5 5,667,810 + AO356_25015 0.57 +0.5 5,667,810 + AO356_25015 0.57 -0.5 5,667,810 + AO356_25015 0.57 -0.5 5,667,810 + AO356_25015 0.57 +1.5 5,667,811 - AO356_25015 0.57 +0.3 5,667,884 + AO356_25015 0.63 -2.3 5,667,885 - AO356_25015 0.63 +0.2
Or see this region's nucleotide sequence