Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24335

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24330 and AO356_24335 overlap by 17 nucleotidesAO356_24335 and AO356_24340 are separated by 13 nucleotidesAO356_24340 and AO356_24345 are separated by 183 nucleotides AO356_24330: AO356_24330 - type VI secretion system protein ImpG, at 5,491,840 to 5,493,630 _24330 AO356_24335: AO356_24335 - type VI secretion protein, at 5,493,614 to 5,494,057 _24335 AO356_24340: AO356_24340 - type VI secretion effector protein (Hcp), at 5,494,071 to 5,494,568 _24340 AO356_24345: AO356_24345 - EvpB family type VI secretion protein, at 5,494,752 to 5,496,233 _24345 Position (kb) 5493 5494 5495Strain fitness (log2 ratio) -2 -1 0 1at 5492.777 kb on + strandat 5492.777 kb on + strand, within AO356_24330at 5492.778 kb on - strand, within AO356_24330at 5492.778 kb on - strand, within AO356_24330at 5492.778 kb on - strand, within AO356_24330at 5492.778 kb on - strand, within AO356_24330at 5492.783 kb on + strand, within AO356_24330at 5492.783 kb on + strand, within AO356_24330at 5492.784 kb on - strand, within AO356_24330at 5492.784 kb on - strand, within AO356_24330at 5492.784 kb on - strand, within AO356_24330at 5492.858 kb on + strand, within AO356_24330at 5492.858 kb on + strand, within AO356_24330at 5492.859 kb on - strand, within AO356_24330at 5493.021 kb on - strand, within AO356_24330at 5493.594 kb on - strandat 5493.596 kb on + strandat 5493.597 kb on - strandat 5493.635 kb on + strandat 5493.636 kb on - strandat 5493.636 kb on - strandat 5493.636 kb on - strandat 5493.879 kb on + strand, within AO356_24335at 5494.072 kb on + strandat 5494.072 kb on + strandat 5494.073 kb on - strandat 5494.130 kb on + strand, within AO356_24340at 5494.258 kb on + strand, within AO356_24340at 5494.258 kb on + strand, within AO356_24340at 5494.258 kb on + strand, within AO356_24340at 5494.259 kb on - strand, within AO356_24340at 5494.259 kb on - strand, within AO356_24340at 5494.351 kb on + strand, within AO356_24340at 5494.352 kb on - strand, within AO356_24340at 5494.352 kb on - strand, within AO356_24340at 5494.352 kb on - strand, within AO356_24340at 5494.480 kb on + strand, within AO356_24340at 5494.730 kb on + strandat 5494.738 kb on + strandat 5494.739 kb on - strandat 5494.739 kb on - strandat 5494.762 kb on - strandat 5494.849 kb on + strandat 5494.849 kb on + strandat 5494.951 kb on + strand, within AO356_24345at 5494.975 kb on + strand, within AO356_24345at 5495.039 kb on - strand, within AO356_24345

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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5,492,777 + +0.1
5,492,777 + AO356_24330 0.52 -0.2
5,492,778 - AO356_24330 0.52 -0.4
5,492,778 - AO356_24330 0.52 +0.2
5,492,778 - AO356_24330 0.52 -1.3
5,492,778 - AO356_24330 0.52 +1.4
5,492,783 + AO356_24330 0.53 -0.1
5,492,783 + AO356_24330 0.53 -0.4
5,492,784 - AO356_24330 0.53 +0.2
5,492,784 - AO356_24330 0.53 -0.2
5,492,784 - AO356_24330 0.53 -1.3
5,492,858 + AO356_24330 0.57 +0.4
5,492,858 + AO356_24330 0.57 +0.1
5,492,859 - AO356_24330 0.57 -1.4
5,493,021 - AO356_24330 0.66 +0.1
5,493,594 - -0.5
5,493,596 + +0.1
5,493,597 - -1.1
5,493,635 + -2.6
5,493,636 - +0.2
5,493,636 - -0.3
5,493,636 - -0.2
5,493,879 + AO356_24335 0.60 -1.9
5,494,072 + -0.1
5,494,072 + +0.9
5,494,073 - -0.7
5,494,130 + AO356_24340 0.12 +0.4
5,494,258 + AO356_24340 0.38 -0.6
5,494,258 + AO356_24340 0.38 -0.4
5,494,258 + AO356_24340 0.38 -0.5
5,494,259 - AO356_24340 0.38 -0.7
5,494,259 - AO356_24340 0.38 -0.3
5,494,351 + AO356_24340 0.56 +0.9
5,494,352 - AO356_24340 0.56 -0.2
5,494,352 - AO356_24340 0.56 +0.1
5,494,352 - AO356_24340 0.56 +0.0
5,494,480 + AO356_24340 0.82 +0.1
5,494,730 + -0.6
5,494,738 + +0.6
5,494,739 - +1.5
5,494,739 - -1.4
5,494,762 - +0.7
5,494,849 + +0.3
5,494,849 + +0.7
5,494,951 + AO356_24345 0.13 -2.1
5,494,975 + AO356_24345 0.15 +0.7
5,495,039 - AO356_24345 0.19 -0.1

Or see this region's nucleotide sequence