Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24330 and AO356_24335 overlap by 17 nucleotides AO356_24335 and AO356_24340 are separated by 13 nucleotides AO356_24340 and AO356_24345 are separated by 183 nucleotides
AO356_24330: AO356_24330 - type VI secretion system protein ImpG, at 5,491,840 to 5,493,630
_24330
AO356_24335: AO356_24335 - type VI secretion protein, at 5,493,614 to 5,494,057
_24335
AO356_24340: AO356_24340 - type VI secretion effector protein (Hcp), at 5,494,071 to 5,494,568
_24340
AO356_24345: AO356_24345 - EvpB family type VI secretion protein, at 5,494,752 to 5,496,233
_24345
Position (kb)
5493
5494
5495 Strain fitness (log2 ratio)
-2
-1
0
1 at 5492.777 kb on + strand at 5492.777 kb on + strand, within AO356_24330 at 5492.778 kb on - strand, within AO356_24330 at 5492.778 kb on - strand, within AO356_24330 at 5492.778 kb on - strand, within AO356_24330 at 5492.778 kb on - strand, within AO356_24330 at 5492.783 kb on + strand, within AO356_24330 at 5492.783 kb on + strand, within AO356_24330 at 5492.784 kb on - strand, within AO356_24330 at 5492.784 kb on - strand, within AO356_24330 at 5492.784 kb on - strand, within AO356_24330 at 5492.858 kb on + strand, within AO356_24330 at 5492.858 kb on + strand, within AO356_24330 at 5492.859 kb on - strand, within AO356_24330 at 5493.021 kb on - strand, within AO356_24330 at 5493.594 kb on - strand at 5493.596 kb on + strand at 5493.597 kb on - strand at 5493.635 kb on + strand at 5493.636 kb on - strand at 5493.636 kb on - strand at 5493.636 kb on - strand at 5493.879 kb on + strand, within AO356_24335 at 5494.072 kb on + strand at 5494.072 kb on + strand at 5494.073 kb on - strand at 5494.130 kb on + strand, within AO356_24340 at 5494.258 kb on + strand, within AO356_24340 at 5494.258 kb on + strand, within AO356_24340 at 5494.258 kb on + strand, within AO356_24340 at 5494.259 kb on - strand, within AO356_24340 at 5494.259 kb on - strand, within AO356_24340 at 5494.351 kb on + strand, within AO356_24340 at 5494.352 kb on - strand, within AO356_24340 at 5494.352 kb on - strand, within AO356_24340 at 5494.352 kb on - strand, within AO356_24340 at 5494.480 kb on + strand, within AO356_24340 at 5494.730 kb on + strand at 5494.738 kb on + strand at 5494.739 kb on - strand at 5494.739 kb on - strand at 5494.762 kb on - strand at 5494.849 kb on + strand at 5494.849 kb on + strand at 5494.951 kb on + strand, within AO356_24345 at 5494.975 kb on + strand, within AO356_24345 at 5495.039 kb on - strand, within AO356_24345
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 5,492,777 + +0.1 5,492,777 + AO356_24330 0.52 -0.2 5,492,778 - AO356_24330 0.52 -0.4 5,492,778 - AO356_24330 0.52 +0.2 5,492,778 - AO356_24330 0.52 -1.3 5,492,778 - AO356_24330 0.52 +1.4 5,492,783 + AO356_24330 0.53 -0.1 5,492,783 + AO356_24330 0.53 -0.4 5,492,784 - AO356_24330 0.53 +0.2 5,492,784 - AO356_24330 0.53 -0.2 5,492,784 - AO356_24330 0.53 -1.3 5,492,858 + AO356_24330 0.57 +0.4 5,492,858 + AO356_24330 0.57 +0.1 5,492,859 - AO356_24330 0.57 -1.4 5,493,021 - AO356_24330 0.66 +0.1 5,493,594 - -0.5 5,493,596 + +0.1 5,493,597 - -1.1 5,493,635 + -2.6 5,493,636 - +0.2 5,493,636 - -0.3 5,493,636 - -0.2 5,493,879 + AO356_24335 0.60 -1.9 5,494,072 + -0.1 5,494,072 + +0.9 5,494,073 - -0.7 5,494,130 + AO356_24340 0.12 +0.4 5,494,258 + AO356_24340 0.38 -0.6 5,494,258 + AO356_24340 0.38 -0.4 5,494,258 + AO356_24340 0.38 -0.5 5,494,259 - AO356_24340 0.38 -0.7 5,494,259 - AO356_24340 0.38 -0.3 5,494,351 + AO356_24340 0.56 +0.9 5,494,352 - AO356_24340 0.56 -0.2 5,494,352 - AO356_24340 0.56 +0.1 5,494,352 - AO356_24340 0.56 +0.0 5,494,480 + AO356_24340 0.82 +0.1 5,494,730 + -0.6 5,494,738 + +0.6 5,494,739 - +1.5 5,494,739 - -1.4 5,494,762 - +0.7 5,494,849 + +0.3 5,494,849 + +0.7 5,494,951 + AO356_24345 0.13 -2.1 5,494,975 + AO356_24345 0.15 +0.7 5,495,039 - AO356_24345 0.19 -0.1
Or see this region's nucleotide sequence