Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22900

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22895 and AO356_22900 are separated by 134 nucleotidesAO356_22900 and AO356_22905 are separated by 429 nucleotides AO356_22895: AO356_22895 - hypothetical protein, at 5,111,932 to 5,114,172 _22895 AO356_22900: AO356_22900 - hypothetical protein, at 5,114,307 to 5,114,795 _22900 AO356_22905: AO356_22905 - transcriptional regulator, at 5,115,225 to 5,115,926 _22905 Position (kb) 5114 5115Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5113.310 kb on + strand, within AO356_22895at 5113.315 kb on + strand, within AO356_22895at 5113.315 kb on + strand, within AO356_22895at 5113.326 kb on + strand, within AO356_22895at 5113.326 kb on + strand, within AO356_22895at 5113.326 kb on + strand, within AO356_22895at 5113.327 kb on - strand, within AO356_22895at 5113.335 kb on - strand, within AO356_22895at 5113.335 kb on - strand, within AO356_22895at 5113.338 kb on + strand, within AO356_22895at 5113.339 kb on - strand, within AO356_22895at 5113.339 kb on - strand, within AO356_22895at 5113.396 kb on + strand, within AO356_22895at 5113.408 kb on + strand, within AO356_22895at 5113.408 kb on + strand, within AO356_22895at 5113.408 kb on + strand, within AO356_22895at 5113.408 kb on + strand, within AO356_22895at 5113.409 kb on - strand, within AO356_22895at 5113.409 kb on - strand, within AO356_22895at 5113.438 kb on + strand, within AO356_22895at 5113.438 kb on + strand, within AO356_22895at 5113.439 kb on - strand, within AO356_22895at 5113.440 kb on + strand, within AO356_22895at 5113.440 kb on + strand, within AO356_22895at 5113.440 kb on + strand, within AO356_22895at 5113.530 kb on + strand, within AO356_22895at 5113.531 kb on - strand, within AO356_22895at 5113.531 kb on - strand, within AO356_22895at 5113.531 kb on - strand, within AO356_22895at 5113.586 kb on - strand, within AO356_22895at 5113.586 kb on - strand, within AO356_22895at 5113.597 kb on + strand, within AO356_22895at 5113.597 kb on + strand, within AO356_22895at 5113.597 kb on + strand, within AO356_22895at 5113.597 kb on + strand, within AO356_22895at 5113.598 kb on - strand, within AO356_22895at 5113.630 kb on + strand, within AO356_22895at 5113.630 kb on + strand, within AO356_22895at 5113.631 kb on - strand, within AO356_22895at 5113.647 kb on + strand, within AO356_22895at 5113.714 kb on + strand, within AO356_22895at 5113.714 kb on + strand, within AO356_22895at 5113.715 kb on - strand, within AO356_22895at 5113.778 kb on - strand, within AO356_22895at 5113.792 kb on + strand, within AO356_22895at 5113.797 kb on + strand, within AO356_22895at 5113.797 kb on + strand, within AO356_22895at 5113.797 kb on + strand, within AO356_22895at 5113.797 kb on + strand, within AO356_22895at 5113.798 kb on - strand, within AO356_22895at 5113.798 kb on - strand, within AO356_22895at 5113.798 kb on - strand, within AO356_22895at 5113.798 kb on - strand, within AO356_22895at 5113.849 kb on - strand, within AO356_22895at 5113.915 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.948 kb on + strand, within AO356_22895at 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.949 kb on - strandat 5113.952 kb on + strandat 5113.952 kb on + strandat 5113.952 kb on + strandat 5113.952 kb on + strandat 5113.953 kb on - strandat 5113.953 kb on - strandat 5113.953 kb on - strandat 5113.953 kb on - strandat 5113.986 kb on + strandat 5113.987 kb on - strandat 5113.987 kb on - strandat 5114.008 kb on - strandat 5114.008 kb on - strandat 5114.108 kb on - strandat 5114.230 kb on + strandat 5114.230 kb on + strandat 5114.230 kb on + strandat 5114.230 kb on + strandat 5114.230 kb on + strandat 5114.231 kb on - strandat 5114.231 kb on - strandat 5114.321 kb on + strandat 5114.322 kb on - strandat 5114.367 kb on - strand, within AO356_22900at 5114.385 kb on + strand, within AO356_22900at 5114.385 kb on + strand, within AO356_22900at 5114.385 kb on + strand, within AO356_22900at 5114.386 kb on - strand, within AO356_22900at 5114.386 kb on - strand, within AO356_22900at 5114.386 kb on - strand, within AO356_22900at 5114.416 kb on + strand, within AO356_22900at 5114.417 kb on - strand, within AO356_22900at 5114.493 kb on + strand, within AO356_22900at 5114.494 kb on - strand, within AO356_22900at 5114.501 kb on + strand, within AO356_22900at 5114.502 kb on - strand, within AO356_22900at 5114.578 kb on + strand, within AO356_22900at 5114.579 kb on - strand, within AO356_22900at 5114.593 kb on - strand, within AO356_22900at 5114.630 kb on + strand, within AO356_22900at 5114.632 kb on + strand, within AO356_22900at 5114.632 kb on + strand, within AO356_22900at 5114.705 kb on - strand, within AO356_22900at 5114.708 kb on + strand, within AO356_22900at 5114.709 kb on - strand, within AO356_22900at 5114.715 kb on + strand, within AO356_22900at 5114.746 kb on - strand, within AO356_22900at 5114.799 kb on + strandat 5114.800 kb on - strandat 5114.826 kb on + strandat 5114.853 kb on + strandat 5114.868 kb on - strandat 5114.868 kb on - strandat 5114.868 kb on - strandat 5114.868 kb on - strandat 5114.868 kb on - strandat 5114.868 kb on - strandat 5114.902 kb on - strandat 5115.023 kb on + strandat 5115.024 kb on - strandat 5115.037 kb on + strandat 5115.053 kb on - strandat 5115.053 kb on - strandat 5115.068 kb on + strandat 5115.068 kb on + strandat 5115.069 kb on - strandat 5115.069 kb on - strandat 5115.069 kb on - strandat 5115.069 kb on - strandat 5115.069 kb on - strandat 5115.070 kb on + strandat 5115.071 kb on - strandat 5115.282 kb on + strandat 5115.519 kb on + strand, within AO356_22905at 5115.519 kb on + strand, within AO356_22905at 5115.520 kb on - strand, within AO356_22905at 5115.520 kb on - strand, within AO356_22905at 5115.520 kb on - strand, within AO356_22905at 5115.520 kb on - strand, within AO356_22905at 5115.520 kb on - strand, within AO356_22905at 5115.702 kb on + strand, within AO356_22905at 5115.702 kb on + strand, within AO356_22905at 5115.703 kb on - strand, within AO356_22905at 5115.703 kb on - strand, within AO356_22905

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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5,113,310 + AO356_22895 0.61 -0.6
5,113,315 + AO356_22895 0.62 +0.8
5,113,315 + AO356_22895 0.62 -1.5
5,113,326 + AO356_22895 0.62 -1.3
5,113,326 + AO356_22895 0.62 -0.9
5,113,326 + AO356_22895 0.62 +0.5
5,113,327 - AO356_22895 0.62 +0.1
5,113,335 - AO356_22895 0.63 +0.8
5,113,335 - AO356_22895 0.63 -1.0
5,113,338 + AO356_22895 0.63 -1.0
5,113,339 - AO356_22895 0.63 +0.1
5,113,339 - AO356_22895 0.63 -0.5
5,113,396 + AO356_22895 0.65 +0.7
5,113,408 + AO356_22895 0.66 -0.1
5,113,408 + AO356_22895 0.66 +0.5
5,113,408 + AO356_22895 0.66 -0.5
5,113,408 + AO356_22895 0.66 +0.1
5,113,409 - AO356_22895 0.66 -1.0
5,113,409 - AO356_22895 0.66 +0.5
5,113,438 + AO356_22895 0.67 -0.9
5,113,438 + AO356_22895 0.67 -0.3
5,113,439 - AO356_22895 0.67 -0.2
5,113,440 + AO356_22895 0.67 -0.6
5,113,440 + AO356_22895 0.67 +0.4
5,113,440 + AO356_22895 0.67 -0.7
5,113,530 + AO356_22895 0.71 +0.8
5,113,531 - AO356_22895 0.71 +0.5
5,113,531 - AO356_22895 0.71 +0.6
5,113,531 - AO356_22895 0.71 +0.1
5,113,586 - AO356_22895 0.74 -0.0
5,113,586 - AO356_22895 0.74 +0.1
5,113,597 + AO356_22895 0.74 +0.6
5,113,597 + AO356_22895 0.74 +0.1
5,113,597 + AO356_22895 0.74 +0.8
5,113,597 + AO356_22895 0.74 -1.6
5,113,598 - AO356_22895 0.74 +0.3
5,113,630 + AO356_22895 0.76 +0.0
5,113,630 + AO356_22895 0.76 +0.0
5,113,631 - AO356_22895 0.76 +0.2
5,113,647 + AO356_22895 0.77 -0.2
5,113,714 + AO356_22895 0.80 -1.1
5,113,714 + AO356_22895 0.80 -0.4
5,113,715 - AO356_22895 0.80 -0.6
5,113,778 - AO356_22895 0.82 -0.7
5,113,792 + AO356_22895 0.83 +0.1
5,113,797 + AO356_22895 0.83 +0.9
5,113,797 + AO356_22895 0.83 +0.8
5,113,797 + AO356_22895 0.83 +0.3
5,113,797 + AO356_22895 0.83 +0.1
5,113,798 - AO356_22895 0.83 -1.1
5,113,798 - AO356_22895 0.83 +0.8
5,113,798 - AO356_22895 0.83 -0.5
5,113,798 - AO356_22895 0.83 +1.0
5,113,849 - AO356_22895 0.86 +0.2
5,113,915 + AO356_22895 0.88 -1.1
5,113,948 + AO356_22895 0.90 -0.4
5,113,948 + AO356_22895 0.90 -2.4
5,113,948 + AO356_22895 0.90 -0.5
5,113,948 + AO356_22895 0.90 -0.1
5,113,948 + AO356_22895 0.90 -0.1
5,113,948 + AO356_22895 0.90 -0.4
5,113,948 + AO356_22895 0.90 +0.8
5,113,948 + AO356_22895 0.90 -0.7
5,113,948 + AO356_22895 0.90 +0.6
5,113,949 - +0.9
5,113,949 - +0.2
5,113,949 - +0.1
5,113,949 - +0.4
5,113,949 - -0.2
5,113,949 - -0.4
5,113,949 - +0.5
5,113,949 - -0.3
5,113,949 - +0.8
5,113,949 - +0.6
5,113,949 - +0.6
5,113,949 - +1.7
5,113,949 - +0.6
5,113,952 + -0.4
5,113,952 + +1.1
5,113,952 + +0.8
5,113,952 + -0.5
5,113,953 - -0.2
5,113,953 - -0.5
5,113,953 - +0.6
5,113,953 - +1.8
5,113,986 + -0.5
5,113,987 - -0.5
5,113,987 - -0.3
5,114,008 - +0.2
5,114,008 - +0.8
5,114,108 - +0.5
5,114,230 + -1.1
5,114,230 + -0.4
5,114,230 + -0.7
5,114,230 + +0.4
5,114,230 + +0.5
5,114,231 - -0.5
5,114,231 - +0.5
5,114,321 + +0.9
5,114,322 - -1.0
5,114,367 - AO356_22900 0.12 +1.3
5,114,385 + AO356_22900 0.16 +0.1
5,114,385 + AO356_22900 0.16 -1.0
5,114,385 + AO356_22900 0.16 +0.8
5,114,386 - AO356_22900 0.16 +0.5
5,114,386 - AO356_22900 0.16 -0.9
5,114,386 - AO356_22900 0.16 -0.3
5,114,416 + AO356_22900 0.22 +0.0
5,114,417 - AO356_22900 0.22 +0.5
5,114,493 + AO356_22900 0.38 -0.6
5,114,494 - AO356_22900 0.38 -0.5
5,114,501 + AO356_22900 0.40 +0.8
5,114,502 - AO356_22900 0.40 +1.4
5,114,578 + AO356_22900 0.55 -1.0
5,114,579 - AO356_22900 0.56 -0.3
5,114,593 - AO356_22900 0.58 -0.3
5,114,630 + AO356_22900 0.66 +0.6
5,114,632 + AO356_22900 0.66 -1.2
5,114,632 + AO356_22900 0.66 +0.2
5,114,705 - AO356_22900 0.81 -0.7
5,114,708 + AO356_22900 0.82 +0.4
5,114,709 - AO356_22900 0.82 -1.2
5,114,715 + AO356_22900 0.83 -2.4
5,114,746 - AO356_22900 0.90 -1.2
5,114,799 + +0.0
5,114,800 - +1.1
5,114,826 + -0.0
5,114,853 + -0.2
5,114,868 - +2.8
5,114,868 - +0.4
5,114,868 - -0.1
5,114,868 - -0.5
5,114,868 - -1.1
5,114,868 - +1.2
5,114,902 - -1.1
5,115,023 + -0.0
5,115,024 - +1.5
5,115,037 + +0.0
5,115,053 - -1.9
5,115,053 - -0.0
5,115,068 + +0.6
5,115,068 + -0.2
5,115,069 - -0.3
5,115,069 - -0.5
5,115,069 - -0.2
5,115,069 - +0.5
5,115,069 - +0.5
5,115,070 + -0.6
5,115,071 - -1.5
5,115,282 + -0.4
5,115,519 + AO356_22905 0.42 -1.6
5,115,519 + AO356_22905 0.42 -0.7
5,115,520 - AO356_22905 0.42 -2.0
5,115,520 - AO356_22905 0.42 +0.5
5,115,520 - AO356_22905 0.42 -0.9
5,115,520 - AO356_22905 0.42 -0.4
5,115,520 - AO356_22905 0.42 -0.8
5,115,702 + AO356_22905 0.68 -0.1
5,115,702 + AO356_22905 0.68 +0.0
5,115,703 - AO356_22905 0.68 -0.6
5,115,703 - AO356_22905 0.68 -1.4

Or see this region's nucleotide sequence