Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21245

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21240 and AO356_21245 are separated by 199 nucleotidesAO356_21245 and AO356_21250 are separated by 12 nucleotides AO356_21240: AO356_21240 - diaminopimelate epimerase, at 4,766,540 to 4,767,532 _21240 AO356_21245: AO356_21245 - cytosine deaminase, at 4,767,732 to 4,768,979 _21245 AO356_21250: AO356_21250 - cytosine permease, at 4,768,992 to 4,770,263 _21250 Position (kb) 4767 4768 4769Strain fitness (log2 ratio) -2 -1 0 1 2at 4766.784 kb on + strand, within AO356_21240at 4766.784 kb on + strand, within AO356_21240at 4766.784 kb on + strand, within AO356_21240at 4766.784 kb on + strand, within AO356_21240at 4766.784 kb on + strand, within AO356_21240at 4766.785 kb on - strand, within AO356_21240at 4766.914 kb on + strand, within AO356_21240at 4767.236 kb on + strand, within AO356_21240at 4767.619 kb on + strandat 4767.620 kb on - strandat 4767.620 kb on - strandat 4767.671 kb on + strandat 4767.671 kb on + strandat 4767.672 kb on - strandat 4767.672 kb on - strandat 4767.672 kb on - strandat 4767.672 kb on - strandat 4767.672 kb on - strandat 4767.839 kb on - strandat 4767.987 kb on - strand, within AO356_21245at 4767.987 kb on - strand, within AO356_21245at 4767.987 kb on - strand, within AO356_21245at 4768.225 kb on + strand, within AO356_21245at 4768.226 kb on - strand, within AO356_21245at 4768.433 kb on - strand, within AO356_21245at 4768.433 kb on - strand, within AO356_21245at 4768.993 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.995 kb on + strandat 4768.996 kb on - strandat 4768.996 kb on - strandat 4768.996 kb on - strandat 4769.005 kb on - strandat 4769.005 kb on - strandat 4769.027 kb on + strandat 4769.046 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.053 kb on + strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.054 kb on - strandat 4769.270 kb on - strand, within AO356_21250at 4769.270 kb on - strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.287 kb on + strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.288 kb on - strand, within AO356_21250at 4769.291 kb on + strand, within AO356_21250at 4769.291 kb on + strand, within AO356_21250at 4769.292 kb on - strand, within AO356_21250at 4769.292 kb on - strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.392 kb on + strand, within AO356_21250at 4769.481 kb on + strand, within AO356_21250at 4769.481 kb on + strand, within AO356_21250at 4769.482 kb on - strand, within AO356_21250at 4769.497 kb on + strand, within AO356_21250at 4769.497 kb on + strand, within AO356_21250at 4769.498 kb on - strand, within AO356_21250at 4769.685 kb on - strand, within AO356_21250at 4769.772 kb on + strand, within AO356_21250at 4769.773 kb on - strand, within AO356_21250at 4769.782 kb on + strand, within AO356_21250at 4769.782 kb on + strand, within AO356_21250at 4769.783 kb on - strand, within AO356_21250at 4769.783 kb on - strand, within AO356_21250at 4769.815 kb on + strand, within AO356_21250at 4769.815 kb on + strand, within AO356_21250at 4769.887 kb on + strand, within AO356_21250at 4769.888 kb on - strand, within AO356_21250at 4769.929 kb on + strand, within AO356_21250

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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4,766,784 + AO356_21240 0.25 +0.0
4,766,784 + AO356_21240 0.25 -0.1
4,766,784 + AO356_21240 0.25 +2.1
4,766,784 + AO356_21240 0.25 -0.4
4,766,784 + AO356_21240 0.25 +0.2
4,766,785 - AO356_21240 0.25 -0.4
4,766,914 + AO356_21240 0.38 -2.0
4,767,236 + AO356_21240 0.70 +0.5
4,767,619 + +0.1
4,767,620 - -1.0
4,767,620 - +0.4
4,767,671 + +0.4
4,767,671 + -0.6
4,767,672 - +0.1
4,767,672 - -0.5
4,767,672 - -0.1
4,767,672 - -0.7
4,767,672 - -0.1
4,767,839 - +0.3
4,767,987 - AO356_21245 0.20 -0.0
4,767,987 - AO356_21245 0.20 +1.1
4,767,987 - AO356_21245 0.20 +0.9
4,768,225 + AO356_21245 0.40 -1.9
4,768,226 - AO356_21245 0.40 +1.1
4,768,433 - AO356_21245 0.56 -0.4
4,768,433 - AO356_21245 0.56 -1.4
4,768,993 + -0.5
4,768,995 + -0.2
4,768,995 + -0.5
4,768,995 + -2.2
4,768,995 + +1.0
4,768,995 + -0.7
4,768,996 - +0.6
4,768,996 - +0.3
4,768,996 - +0.5
4,769,005 - +0.2
4,769,005 - +0.6
4,769,027 + +0.4
4,769,046 + -0.6
4,769,053 + -0.1
4,769,053 + -0.6
4,769,053 + -0.6
4,769,053 + -0.2
4,769,053 + -0.4
4,769,053 + +0.1
4,769,053 + +0.5
4,769,053 + +1.3
4,769,054 - -0.3
4,769,054 - -0.9
4,769,054 - -0.5
4,769,054 - +0.9
4,769,054 - -1.4
4,769,054 - -0.4
4,769,054 - +0.3
4,769,270 - AO356_21250 0.22 -0.7
4,769,270 - AO356_21250 0.22 -1.2
4,769,287 + AO356_21250 0.23 -1.4
4,769,287 + AO356_21250 0.23 -0.1
4,769,287 + AO356_21250 0.23 -0.4
4,769,287 + AO356_21250 0.23 -0.7
4,769,287 + AO356_21250 0.23 -0.7
4,769,287 + AO356_21250 0.23 +2.5
4,769,287 + AO356_21250 0.23 +1.2
4,769,287 + AO356_21250 0.23 +0.6
4,769,288 - AO356_21250 0.23 -0.8
4,769,288 - AO356_21250 0.23 -0.2
4,769,288 - AO356_21250 0.23 +0.4
4,769,288 - AO356_21250 0.23 -0.4
4,769,288 - AO356_21250 0.23 +0.4
4,769,288 - AO356_21250 0.23 -0.3
4,769,288 - AO356_21250 0.23 +0.5
4,769,291 + AO356_21250 0.24 +0.4
4,769,291 + AO356_21250 0.24 -1.6
4,769,292 - AO356_21250 0.24 -0.4
4,769,292 - AO356_21250 0.24 +0.4
4,769,392 + AO356_21250 0.31 +0.1
4,769,392 + AO356_21250 0.31 +0.2
4,769,392 + AO356_21250 0.31 -0.2
4,769,392 + AO356_21250 0.31 -0.9
4,769,392 + AO356_21250 0.31 -2.2
4,769,392 + AO356_21250 0.31 -1.5
4,769,481 + AO356_21250 0.38 +1.9
4,769,481 + AO356_21250 0.38 +0.4
4,769,482 - AO356_21250 0.39 +1.0
4,769,497 + AO356_21250 0.40 -0.5
4,769,497 + AO356_21250 0.40 +0.1
4,769,498 - AO356_21250 0.40 +1.4
4,769,685 - AO356_21250 0.54 -0.2
4,769,772 + AO356_21250 0.61 +0.6
4,769,773 - AO356_21250 0.61 -0.0
4,769,782 + AO356_21250 0.62 -0.1
4,769,782 + AO356_21250 0.62 +0.6
4,769,783 - AO356_21250 0.62 -0.3
4,769,783 - AO356_21250 0.62 -0.5
4,769,815 + AO356_21250 0.65 +0.5
4,769,815 + AO356_21250 0.65 +0.3
4,769,887 + AO356_21250 0.70 -0.7
4,769,888 - AO356_21250 0.70 +0.1
4,769,929 + AO356_21250 0.74 +0.3

Or see this region's nucleotide sequence