Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17745

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17740 and AO356_17745 are separated by 306 nucleotidesAO356_17745 and AO356_17750 are separated by 142 nucleotides AO356_17740: AO356_17740 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,001,891 to 4,004,203 _17740 AO356_17745: AO356_17745 - alpha/beta hydrolase, at 4,004,510 to 4,005,529 _17745 AO356_17750: AO356_17750 - LysR family transcriptional regulator, at 4,005,672 to 4,006,553 _17750 Position (kb) 4004 4005 4006Strain fitness (log2 ratio) -2 -1 0 1 2at 4003.784 kb on + strand, within AO356_17740at 4003.865 kb on + strand, within AO356_17740at 4003.865 kb on + strand, within AO356_17740at 4003.866 kb on - strand, within AO356_17740at 4003.866 kb on - strand, within AO356_17740at 4003.866 kb on - strand, within AO356_17740at 4003.980 kb on - strandat 4004.006 kb on + strandat 4004.006 kb on + strandat 4004.007 kb on - strandat 4004.316 kb on + strandat 4004.317 kb on - strandat 4004.317 kb on - strandat 4004.317 kb on - strandat 4004.480 kb on + strandat 4004.517 kb on + strandat 4004.517 kb on + strandat 4004.518 kb on - strandat 4004.521 kb on + strandat 4004.521 kb on + strandat 4004.521 kb on + strandat 4004.521 kb on + strandat 4004.521 kb on + strandat 4004.521 kb on + strandat 4004.627 kb on + strand, within AO356_17745at 4004.831 kb on + strand, within AO356_17745at 4004.831 kb on + strand, within AO356_17745at 4004.832 kb on - strand, within AO356_17745at 4004.862 kb on - strand, within AO356_17745at 4004.862 kb on - strand, within AO356_17745at 4004.862 kb on - strand, within AO356_17745at 4004.863 kb on + strand, within AO356_17745at 4004.864 kb on - strand, within AO356_17745at 4004.916 kb on + strand, within AO356_17745at 4004.916 kb on + strand, within AO356_17745at 4004.916 kb on + strand, within AO356_17745at 4004.917 kb on - strand, within AO356_17745at 4004.917 kb on - strand, within AO356_17745at 4004.917 kb on - strand, within AO356_17745at 4004.931 kb on + strand, within AO356_17745at 4004.931 kb on + strand, within AO356_17745at 4004.932 kb on - strand, within AO356_17745at 4005.197 kb on + strand, within AO356_17745at 4005.197 kb on + strand, within AO356_17745at 4005.456 kb on - strandat 4005.530 kb on + strandat 4005.531 kb on - strandat 4005.750 kb on + strandat 4005.750 kb on + strandat 4005.750 kb on + strandat 4005.751 kb on - strandat 4006.123 kb on + strand, within AO356_17750at 4006.124 kb on - strand, within AO356_17750at 4006.124 kb on - strand, within AO356_17750at 4006.124 kb on - strand, within AO356_17750at 4006.275 kb on + strand, within AO356_17750at 4006.275 kb on + strand, within AO356_17750at 4006.276 kb on - strand, within AO356_17750at 4006.276 kb on - strand, within AO356_17750at 4006.409 kb on - strand, within AO356_17750

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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4,003,784 + AO356_17740 0.82 +0.9
4,003,865 + AO356_17740 0.85 -1.7
4,003,865 + AO356_17740 0.85 -0.7
4,003,866 - AO356_17740 0.85 -0.5
4,003,866 - AO356_17740 0.85 +0.5
4,003,866 - AO356_17740 0.85 +0.8
4,003,980 - -0.8
4,004,006 + +1.2
4,004,006 + +0.4
4,004,007 - -1.5
4,004,316 + +0.1
4,004,317 - -0.5
4,004,317 - +0.4
4,004,317 - +0.6
4,004,480 + +0.8
4,004,517 + -0.5
4,004,517 + +0.9
4,004,518 - -1.1
4,004,521 + +0.7
4,004,521 + -0.0
4,004,521 + -1.3
4,004,521 + -0.1
4,004,521 + -1.2
4,004,521 + +0.5
4,004,627 + AO356_17745 0.11 +0.7
4,004,831 + AO356_17745 0.31 +0.7
4,004,831 + AO356_17745 0.31 +0.7
4,004,832 - AO356_17745 0.32 -1.5
4,004,862 - AO356_17745 0.35 -1.2
4,004,862 - AO356_17745 0.35 +0.5
4,004,862 - AO356_17745 0.35 +0.7
4,004,863 + AO356_17745 0.35 -0.3
4,004,864 - AO356_17745 0.35 +0.7
4,004,916 + AO356_17745 0.40 -0.0
4,004,916 + AO356_17745 0.40 -0.1
4,004,916 + AO356_17745 0.40 -1.5
4,004,917 - AO356_17745 0.40 +0.2
4,004,917 - AO356_17745 0.40 -0.7
4,004,917 - AO356_17745 0.40 -1.2
4,004,931 + AO356_17745 0.41 -0.1
4,004,931 + AO356_17745 0.41 -0.4
4,004,932 - AO356_17745 0.41 +0.1
4,005,197 + AO356_17745 0.67 +1.8
4,005,197 + AO356_17745 0.67 +0.1
4,005,456 - +0.6
4,005,530 + -0.9
4,005,531 - +1.8
4,005,750 + -1.4
4,005,750 + -0.1
4,005,750 + +0.5
4,005,751 - +0.1
4,006,123 + AO356_17750 0.51 -0.8
4,006,124 - AO356_17750 0.51 +0.0
4,006,124 - AO356_17750 0.51 -0.5
4,006,124 - AO356_17750 0.51 -1.6
4,006,275 + AO356_17750 0.68 -0.3
4,006,275 + AO356_17750 0.68 -0.7
4,006,276 - AO356_17750 0.68 +0.1
4,006,276 - AO356_17750 0.68 -2.0
4,006,409 - AO356_17750 0.84 +0.3

Or see this region's nucleotide sequence