Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16780

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16770 and AO356_16775 are separated by 140 nucleotidesAO356_16775 and AO356_16780 overlap by 1 nucleotidesAO356_16780 and AO356_16785 are separated by 287 nucleotides AO356_16770: AO356_16770 - flavodoxin, at 3,778,491 to 3,778,946 _16770 AO356_16775: AO356_16775 - aldolase, at 3,779,087 to 3,779,869 _16775 AO356_16780: AO356_16780 - alpha/beta hydrolase, at 3,779,869 to 3,780,771 _16780 AO356_16785: AO356_16785 - serine/threonine protein kinase, at 3,781,059 to 3,781,970 _16785 Position (kb) 3779 3780 3781Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3778.974 kb on + strandat 3778.974 kb on + strandat 3778.974 kb on + strandat 3778.974 kb on + strandat 3778.975 kb on - strandat 3778.995 kb on + strandat 3778.995 kb on + strandat 3778.995 kb on + strandat 3779.017 kb on + strandat 3779.017 kb on + strandat 3779.018 kb on - strandat 3779.018 kb on - strandat 3779.035 kb on + strandat 3779.060 kb on + strandat 3779.060 kb on + strandat 3779.060 kb on + strandat 3779.061 kb on - strandat 3779.061 kb on - strandat 3779.061 kb on - strandat 3779.062 kb on + strandat 3779.062 kb on + strandat 3779.062 kb on + strandat 3779.063 kb on - strandat 3779.095 kb on - strandat 3779.119 kb on + strandat 3779.193 kb on + strand, within AO356_16775at 3779.193 kb on + strand, within AO356_16775at 3779.193 kb on + strand, within AO356_16775at 3779.193 kb on + strand, within AO356_16775at 3779.193 kb on + strand, within AO356_16775at 3779.193 kb on + strand, within AO356_16775at 3779.194 kb on - strand, within AO356_16775at 3779.194 kb on - strand, within AO356_16775at 3779.194 kb on - strand, within AO356_16775at 3779.194 kb on - strand, within AO356_16775at 3779.224 kb on + strand, within AO356_16775at 3779.224 kb on + strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.225 kb on - strand, within AO356_16775at 3779.372 kb on + strand, within AO356_16775at 3779.372 kb on + strand, within AO356_16775at 3779.373 kb on - strand, within AO356_16775at 3779.522 kb on + strand, within AO356_16775at 3779.523 kb on - strand, within AO356_16775at 3779.532 kb on - strand, within AO356_16775at 3779.859 kb on - strandat 3779.860 kb on + strandat 3779.860 kb on + strandat 3779.860 kb on + strandat 3779.860 kb on + strandat 3779.860 kb on + strandat 3779.861 kb on - strandat 3779.861 kb on - strandat 3779.895 kb on + strandat 3779.895 kb on + strandat 3779.896 kb on - strandat 3779.896 kb on - strandat 3779.896 kb on - strandat 3780.019 kb on + strand, within AO356_16780at 3780.019 kb on + strand, within AO356_16780at 3780.019 kb on + strand, within AO356_16780at 3780.019 kb on + strand, within AO356_16780at 3780.019 kb on + strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.020 kb on - strand, within AO356_16780at 3780.109 kb on + strand, within AO356_16780at 3780.109 kb on + strand, within AO356_16780at 3780.109 kb on + strand, within AO356_16780at 3780.109 kb on + strand, within AO356_16780at 3780.109 kb on + strand, within AO356_16780at 3780.110 kb on - strand, within AO356_16780at 3780.196 kb on + strand, within AO356_16780at 3780.196 kb on + strand, within AO356_16780at 3780.196 kb on + strand, within AO356_16780at 3780.235 kb on + strand, within AO356_16780at 3780.235 kb on + strand, within AO356_16780at 3780.499 kb on + strand, within AO356_16780at 3780.499 kb on + strand, within AO356_16780at 3780.500 kb on - strand, within AO356_16780at 3780.500 kb on - strand, within AO356_16780at 3780.500 kb on - strand, within AO356_16780at 3780.500 kb on - strand, within AO356_16780at 3780.500 kb on - strand, within AO356_16780at 3780.501 kb on + strand, within AO356_16780at 3780.501 kb on + strand, within AO356_16780at 3780.676 kb on + strand, within AO356_16780at 3780.715 kb on + strandat 3780.716 kb on - strandat 3780.716 kb on - strandat 3780.716 kb on - strandat 3780.836 kb on + strandat 3780.836 kb on + strandat 3780.837 kb on - strandat 3780.837 kb on - strandat 3780.837 kb on - strandat 3780.837 kb on - strandat 3780.837 kb on - strandat 3780.840 kb on + strandat 3780.840 kb on + strandat 3780.841 kb on - strandat 3780.841 kb on - strandat 3781.085 kb on + strandat 3781.085 kb on + strandat 3781.307 kb on - strand, within AO356_16785at 3781.307 kb on - strand, within AO356_16785at 3781.417 kb on - strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.440 kb on + strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.441 kb on - strand, within AO356_16785at 3781.485 kb on + strand, within AO356_16785at 3781.485 kb on + strand, within AO356_16785at 3781.486 kb on - strand, within AO356_16785at 3781.486 kb on - strand, within AO356_16785at 3781.486 kb on - strand, within AO356_16785at 3781.524 kb on + strand, within AO356_16785at 3781.524 kb on + strand, within AO356_16785at 3781.525 kb on - strand, within AO356_16785at 3781.525 kb on - strand, within AO356_16785at 3781.525 kb on - strand, within AO356_16785at 3781.548 kb on + strand, within AO356_16785at 3781.549 kb on - strand, within AO356_16785at 3781.549 kb on - strand, within AO356_16785at 3781.549 kb on - strand, within AO356_16785at 3781.572 kb on + strand, within AO356_16785at 3781.728 kb on + strand, within AO356_16785at 3781.728 kb on + strand, within AO356_16785at 3781.729 kb on - strand, within AO356_16785at 3781.729 kb on - strand, within AO356_16785at 3781.729 kb on - strand, within AO356_16785at 3781.729 kb on - strand, within AO356_16785at 3781.729 kb on - strand, within AO356_16785

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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3,778,974 + +0.6
3,778,974 + -1.1
3,778,974 + -0.4
3,778,974 + -0.6
3,778,975 - +0.8
3,778,995 + +1.5
3,778,995 + +0.5
3,778,995 + +0.2
3,779,017 + -0.6
3,779,017 + -0.8
3,779,018 - +0.4
3,779,018 - +1.0
3,779,035 + -1.7
3,779,060 + +0.5
3,779,060 + +0.1
3,779,060 + -0.4
3,779,061 - -0.7
3,779,061 - -1.1
3,779,061 - +1.0
3,779,062 + -0.5
3,779,062 + -0.1
3,779,062 + +1.1
3,779,063 - -0.2
3,779,095 - +0.5
3,779,119 + +0.2
3,779,193 + AO356_16775 0.14 +0.4
3,779,193 + AO356_16775 0.14 -0.4
3,779,193 + AO356_16775 0.14 -0.2
3,779,193 + AO356_16775 0.14 -1.0
3,779,193 + AO356_16775 0.14 +1.0
3,779,193 + AO356_16775 0.14 -0.2
3,779,194 - AO356_16775 0.14 -0.2
3,779,194 - AO356_16775 0.14 +1.9
3,779,194 - AO356_16775 0.14 -1.1
3,779,194 - AO356_16775 0.14 +0.1
3,779,224 + AO356_16775 0.17 +0.1
3,779,224 + AO356_16775 0.17 +3.5
3,779,225 - AO356_16775 0.18 -0.1
3,779,225 - AO356_16775 0.18 -0.1
3,779,225 - AO356_16775 0.18 +0.6
3,779,225 - AO356_16775 0.18 +0.5
3,779,225 - AO356_16775 0.18 +0.1
3,779,225 - AO356_16775 0.18 -0.7
3,779,225 - AO356_16775 0.18 -0.2
3,779,372 + AO356_16775 0.36 -2.3
3,779,372 + AO356_16775 0.36 +0.1
3,779,373 - AO356_16775 0.37 +1.3
3,779,522 + AO356_16775 0.56 +0.3
3,779,523 - AO356_16775 0.56 +2.2
3,779,532 - AO356_16775 0.57 +0.2
3,779,859 - +0.5
3,779,860 + +0.4
3,779,860 + +1.3
3,779,860 + -0.3
3,779,860 + +1.1
3,779,860 + +0.6
3,779,861 - +1.1
3,779,861 - +0.8
3,779,895 + +0.3
3,779,895 + +0.2
3,779,896 - +0.1
3,779,896 - +0.6
3,779,896 - +0.1
3,780,019 + AO356_16780 0.17 +0.3
3,780,019 + AO356_16780 0.17 -1.4
3,780,019 + AO356_16780 0.17 -0.7
3,780,019 + AO356_16780 0.17 -0.8
3,780,019 + AO356_16780 0.17 +0.4
3,780,020 - AO356_16780 0.17 -0.8
3,780,020 - AO356_16780 0.17 -0.4
3,780,020 - AO356_16780 0.17 +1.6
3,780,020 - AO356_16780 0.17 +0.3
3,780,020 - AO356_16780 0.17 -0.9
3,780,020 - AO356_16780 0.17 -0.8
3,780,109 + AO356_16780 0.27 +0.0
3,780,109 + AO356_16780 0.27 +0.2
3,780,109 + AO356_16780 0.27 +0.2
3,780,109 + AO356_16780 0.27 -0.6
3,780,109 + AO356_16780 0.27 +0.1
3,780,110 - AO356_16780 0.27 +0.1
3,780,196 + AO356_16780 0.36 +0.5
3,780,196 + AO356_16780 0.36 +0.7
3,780,196 + AO356_16780 0.36 -1.7
3,780,235 + AO356_16780 0.41 +1.1
3,780,235 + AO356_16780 0.41 +0.4
3,780,499 + AO356_16780 0.70 +0.8
3,780,499 + AO356_16780 0.70 -0.2
3,780,500 - AO356_16780 0.70 -0.2
3,780,500 - AO356_16780 0.70 -0.5
3,780,500 - AO356_16780 0.70 +0.7
3,780,500 - AO356_16780 0.70 -0.1
3,780,500 - AO356_16780 0.70 +0.6
3,780,501 + AO356_16780 0.70 +1.1
3,780,501 + AO356_16780 0.70 -1.6
3,780,676 + AO356_16780 0.89 +1.1
3,780,715 + +0.5
3,780,716 - -0.1
3,780,716 - +0.4
3,780,716 - -0.6
3,780,836 + -0.1
3,780,836 + +1.3
3,780,837 - +0.2
3,780,837 - +1.1
3,780,837 - +0.5
3,780,837 - +0.7
3,780,837 - -0.9
3,780,840 + +0.6
3,780,840 + -1.3
3,780,841 - -0.9
3,780,841 - +0.7
3,781,085 + +0.5
3,781,085 + +0.9
3,781,307 - AO356_16785 0.27 +0.2
3,781,307 - AO356_16785 0.27 -0.7
3,781,417 - AO356_16785 0.39 +0.2
3,781,440 + AO356_16785 0.42 +0.6
3,781,440 + AO356_16785 0.42 -0.5
3,781,440 + AO356_16785 0.42 +0.4
3,781,440 + AO356_16785 0.42 -1.9
3,781,440 + AO356_16785 0.42 -0.3
3,781,440 + AO356_16785 0.42 -0.1
3,781,440 + AO356_16785 0.42 -0.0
3,781,440 + AO356_16785 0.42 +0.5
3,781,440 + AO356_16785 0.42 +0.7
3,781,440 + AO356_16785 0.42 +1.6
3,781,440 + AO356_16785 0.42 +0.3
3,781,440 + AO356_16785 0.42 +1.5
3,781,440 + AO356_16785 0.42 +0.4
3,781,440 + AO356_16785 0.42 -0.9
3,781,440 + AO356_16785 0.42 +0.9
3,781,441 - AO356_16785 0.42 -1.8
3,781,441 - AO356_16785 0.42 -1.3
3,781,441 - AO356_16785 0.42 -0.0
3,781,441 - AO356_16785 0.42 +0.1
3,781,441 - AO356_16785 0.42 +0.3
3,781,441 - AO356_16785 0.42 +1.7
3,781,441 - AO356_16785 0.42 +0.2
3,781,441 - AO356_16785 0.42 -0.9
3,781,441 - AO356_16785 0.42 -0.6
3,781,441 - AO356_16785 0.42 +0.6
3,781,441 - AO356_16785 0.42 -1.0
3,781,485 + AO356_16785 0.47 -1.0
3,781,485 + AO356_16785 0.47 +1.1
3,781,486 - AO356_16785 0.47 +0.3
3,781,486 - AO356_16785 0.47 +1.7
3,781,486 - AO356_16785 0.47 +0.9
3,781,524 + AO356_16785 0.51 +0.0
3,781,524 + AO356_16785 0.51 +0.4
3,781,525 - AO356_16785 0.51 -0.0
3,781,525 - AO356_16785 0.51 -1.0
3,781,525 - AO356_16785 0.51 -0.3
3,781,548 + AO356_16785 0.54 +0.6
3,781,549 - AO356_16785 0.54 -1.4
3,781,549 - AO356_16785 0.54 +0.7
3,781,549 - AO356_16785 0.54 -0.8
3,781,572 + AO356_16785 0.56 +0.1
3,781,728 + AO356_16785 0.73 -0.7
3,781,728 + AO356_16785 0.73 -0.4
3,781,729 - AO356_16785 0.73 -0.9
3,781,729 - AO356_16785 0.73 -0.0
3,781,729 - AO356_16785 0.73 +1.1
3,781,729 - AO356_16785 0.73 -0.7
3,781,729 - AO356_16785 0.73 +0.1

Or see this region's nucleotide sequence