Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11385 and AO356_11390 overlap by 4 nucleotides AO356_11390 and AO356_11395 are separated by 5 nucleotides AO356_11395 and AO356_11400 are separated by 315 nucleotides
AO356_11385: AO356_11385 - ABC transporter permease, at 2,581,506 to 2,582,444
_11385
AO356_11390: AO356_11390 - ABC transporter, at 2,582,441 to 2,583,073
_11390
AO356_11395: AO356_11395 - hypothetical protein, at 2,583,079 to 2,584,308
_11395
AO356_11400: AO356_11400 - glutamate:protein symporter, at 2,584,624 to 2,585,955
_11400
Position (kb)
2583
2584
2585 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2582.084 kb on + strand, within AO356_11385 at 2582.369 kb on + strand at 2582.370 kb on - strand at 2582.370 kb on - strand at 2582.371 kb on + strand at 2582.371 kb on + strand at 2582.403 kb on + strand at 2582.403 kb on + strand at 2582.404 kb on - strand at 2582.404 kb on - strand at 2582.492 kb on - strand at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.543 kb on + strand, within AO356_11390 at 2582.544 kb on - strand, within AO356_11390 at 2582.544 kb on - strand, within AO356_11390 at 2582.544 kb on - strand, within AO356_11390 at 2582.544 kb on - strand, within AO356_11390 at 2582.544 kb on - strand, within AO356_11390 at 2582.684 kb on + strand, within AO356_11390 at 2582.684 kb on + strand, within AO356_11390 at 2582.685 kb on - strand, within AO356_11390 at 2582.685 kb on - strand, within AO356_11390 at 2582.685 kb on - strand, within AO356_11390 at 2582.685 kb on - strand, within AO356_11390 at 2582.846 kb on + strand, within AO356_11390 at 2582.847 kb on - strand, within AO356_11390 at 2583.095 kb on + strand at 2583.095 kb on + strand at 2583.191 kb on + strand at 2583.191 kb on + strand at 2583.192 kb on - strand at 2583.192 kb on - strand at 2583.192 kb on - strand at 2583.206 kb on + strand, within AO356_11395 at 2583.206 kb on + strand, within AO356_11395 at 2583.206 kb on + strand, within AO356_11395 at 2583.206 kb on + strand, within AO356_11395 at 2583.206 kb on + strand, within AO356_11395 at 2583.206 kb on + strand, within AO356_11395 at 2583.207 kb on - strand, within AO356_11395 at 2583.468 kb on - strand, within AO356_11395 at 2583.468 kb on - strand, within AO356_11395 at 2583.527 kb on + strand, within AO356_11395 at 2583.527 kb on + strand, within AO356_11395 at 2583.527 kb on + strand, within AO356_11395 at 2583.527 kb on + strand, within AO356_11395 at 2583.528 kb on - strand, within AO356_11395 at 2583.528 kb on - strand, within AO356_11395 at 2583.528 kb on - strand, within AO356_11395 at 2583.528 kb on - strand, within AO356_11395 at 2583.567 kb on + strand, within AO356_11395 at 2583.567 kb on + strand, within AO356_11395 at 2583.567 kb on + strand, within AO356_11395 at 2583.567 kb on + strand, within AO356_11395 at 2583.568 kb on - strand, within AO356_11395 at 2583.594 kb on + strand, within AO356_11395 at 2583.689 kb on + strand, within AO356_11395 at 2583.689 kb on + strand, within AO356_11395 at 2583.689 kb on + strand, within AO356_11395 at 2583.690 kb on - strand, within AO356_11395 at 2583.690 kb on - strand, within AO356_11395 at 2583.690 kb on - strand, within AO356_11395 at 2583.830 kb on + strand, within AO356_11395 at 2583.830 kb on + strand, within AO356_11395 at 2583.830 kb on + strand, within AO356_11395 at 2583.830 kb on + strand, within AO356_11395 at 2583.831 kb on - strand, within AO356_11395 at 2583.831 kb on - strand, within AO356_11395 at 2583.831 kb on - strand, within AO356_11395 at 2584.200 kb on + strand at 2584.200 kb on + strand at 2584.200 kb on + strand at 2584.201 kb on - strand at 2584.201 kb on - strand at 2584.313 kb on + strand at 2584.314 kb on - strand at 2584.314 kb on - strand at 2584.314 kb on - strand at 2584.419 kb on + strand at 2584.419 kb on + strand at 2584.419 kb on + strand at 2584.420 kb on - strand at 2584.420 kb on - strand at 2584.692 kb on - strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.715 kb on + strand at 2584.716 kb on - strand at 2584.716 kb on - strand at 2584.716 kb on - strand at 2584.716 kb on - strand at 2584.716 kb on - strand at 2584.716 kb on - strand at 2584.840 kb on - strand, within AO356_11400 at 2584.968 kb on - strand, within AO356_11400 at 2585.004 kb on - strand, within AO356_11400 at 2585.004 kb on - strand, within AO356_11400 at 2585.004 kb on - strand, within AO356_11400 at 2585.135 kb on + strand, within AO356_11400 at 2585.136 kb on - strand, within AO356_11400 at 2585.136 kb on - strand, within AO356_11400 at 2585.246 kb on + strand, within AO356_11400 at 2585.246 kb on + strand, within AO356_11400 at 2585.246 kb on + strand, within AO356_11400 at 2585.246 kb on + strand, within AO356_11400 at 2585.246 kb on + strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400 at 2585.247 kb on - strand, within AO356_11400
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 2,582,084 + AO356_11385 0.62 -0.6 2,582,369 + -3.1 2,582,370 - -0.5 2,582,370 - +1.7 2,582,371 + -1.3 2,582,371 + -0.2 2,582,403 + -0.8 2,582,403 + +0.7 2,582,404 - -0.7 2,582,404 - -0.8 2,582,492 - +0.7 2,582,543 + AO356_11390 0.16 +0.3 2,582,543 + AO356_11390 0.16 -0.2 2,582,543 + AO356_11390 0.16 +0.6 2,582,543 + AO356_11390 0.16 +0.5 2,582,543 + AO356_11390 0.16 +0.8 2,582,543 + AO356_11390 0.16 +0.4 2,582,543 + AO356_11390 0.16 +0.1 2,582,543 + AO356_11390 0.16 -0.6 2,582,544 - AO356_11390 0.16 +1.2 2,582,544 - AO356_11390 0.16 +1.5 2,582,544 - AO356_11390 0.16 -0.1 2,582,544 - AO356_11390 0.16 -0.3 2,582,544 - AO356_11390 0.16 +0.6 2,582,684 + AO356_11390 0.38 +0.1 2,582,684 + AO356_11390 0.38 -0.9 2,582,685 - AO356_11390 0.39 +1.7 2,582,685 - AO356_11390 0.39 -0.3 2,582,685 - AO356_11390 0.39 -0.3 2,582,685 - AO356_11390 0.39 +0.7 2,582,846 + AO356_11390 0.64 -0.9 2,582,847 - AO356_11390 0.64 +0.4 2,583,095 + +0.2 2,583,095 + +0.1 2,583,191 + -1.1 2,583,191 + +0.6 2,583,192 - -2.0 2,583,192 - +1.3 2,583,192 - -0.4 2,583,206 + AO356_11395 0.10 +0.4 2,583,206 + AO356_11395 0.10 +0.4 2,583,206 + AO356_11395 0.10 -1.0 2,583,206 + AO356_11395 0.10 -0.1 2,583,206 + AO356_11395 0.10 -0.3 2,583,206 + AO356_11395 0.10 +0.3 2,583,207 - AO356_11395 0.10 -0.1 2,583,468 - AO356_11395 0.32 +0.3 2,583,468 - AO356_11395 0.32 +0.2 2,583,527 + AO356_11395 0.36 -1.1 2,583,527 + AO356_11395 0.36 +0.7 2,583,527 + AO356_11395 0.36 -0.8 2,583,527 + AO356_11395 0.36 -1.5 2,583,528 - AO356_11395 0.37 -0.9 2,583,528 - AO356_11395 0.37 -0.6 2,583,528 - AO356_11395 0.37 -0.7 2,583,528 - AO356_11395 0.37 -0.7 2,583,567 + AO356_11395 0.40 +1.2 2,583,567 + AO356_11395 0.40 -1.4 2,583,567 + AO356_11395 0.40 +0.7 2,583,567 + AO356_11395 0.40 -1.3 2,583,568 - AO356_11395 0.40 +0.0 2,583,594 + AO356_11395 0.42 +1.1 2,583,689 + AO356_11395 0.50 -1.2 2,583,689 + AO356_11395 0.50 +0.1 2,583,689 + AO356_11395 0.50 -0.7 2,583,690 - AO356_11395 0.50 -0.1 2,583,690 - AO356_11395 0.50 +0.0 2,583,690 - AO356_11395 0.50 -0.7 2,583,830 + AO356_11395 0.61 +0.3 2,583,830 + AO356_11395 0.61 +1.4 2,583,830 + AO356_11395 0.61 -0.9 2,583,830 + AO356_11395 0.61 -1.3 2,583,831 - AO356_11395 0.61 +0.9 2,583,831 - AO356_11395 0.61 -1.6 2,583,831 - AO356_11395 0.61 +0.7 2,584,200 + -1.0 2,584,200 + +0.4 2,584,200 + +1.3 2,584,201 - -0.2 2,584,201 - -0.2 2,584,313 + -1.6 2,584,314 - +1.1 2,584,314 - +0.1 2,584,314 - +0.2 2,584,419 + +0.1 2,584,419 + -1.0 2,584,419 + +0.5 2,584,420 - -0.0 2,584,420 - +2.1 2,584,692 - +0.1 2,584,715 + +1.1 2,584,715 + +0.1 2,584,715 + +0.3 2,584,715 + +0.7 2,584,715 + -0.8 2,584,715 + +0.8 2,584,715 + -1.3 2,584,715 + -0.3 2,584,715 + -1.6 2,584,716 - -1.0 2,584,716 - +1.1 2,584,716 - -2.1 2,584,716 - +0.4 2,584,716 - -1.1 2,584,716 - +0.8 2,584,840 - AO356_11400 0.16 -0.5 2,584,968 - AO356_11400 0.26 -1.1 2,585,004 - AO356_11400 0.29 -1.3 2,585,004 - AO356_11400 0.29 +0.6 2,585,004 - AO356_11400 0.29 -1.5 2,585,135 + AO356_11400 0.38 +0.1 2,585,136 - AO356_11400 0.38 -0.9 2,585,136 - AO356_11400 0.38 +0.7 2,585,246 + AO356_11400 0.47 +1.8 2,585,246 + AO356_11400 0.47 -1.2 2,585,246 + AO356_11400 0.47 +0.0 2,585,246 + AO356_11400 0.47 +0.6 2,585,246 + AO356_11400 0.47 +0.0 2,585,247 - AO356_11400 0.47 +0.9 2,585,247 - AO356_11400 0.47 -1.0 2,585,247 - AO356_11400 0.47 +1.6 2,585,247 - AO356_11400 0.47 -0.4 2,585,247 - AO356_11400 0.47 +0.0 2,585,247 - AO356_11400 0.47 +0.8 2,585,247 - AO356_11400 0.47 +1.4
Or see this region's nucleotide sequence