Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08955

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08955 and AO356_08960 are separated by 382 nucleotides AO356_08955: AO356_08955 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 2,019,167 to 2,022,118 _08955 AO356_08960: AO356_08960 - pyruvate dehydrogenase, at 2,022,501 to 2,025,146 _08960 Position (kb) 2019 2020 2021 2022 2023Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2018.227 kb on - strandat 2018.227 kb on - strandat 2018.247 kb on - strandat 2018.252 kb on - strandat 2018.252 kb on - strandat 2018.252 kb on - strandat 2018.252 kb on - strandat 2018.252 kb on - strandat 2018.289 kb on - strandat 2018.289 kb on - strandat 2018.289 kb on - strandat 2018.289 kb on - strandat 2019.201 kb on - strandat 2019.295 kb on - strandat 2019.379 kb on - strandat 2019.424 kb on - strandat 2019.424 kb on - strandat 2019.424 kb on - strandat 2019.434 kb on - strandat 2019.452 kb on - strandat 2019.612 kb on - strand, within AO356_08955at 2019.612 kb on - strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.795 kb on + strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.796 kb on - strand, within AO356_08955at 2019.988 kb on + strand, within AO356_08955at 2019.989 kb on - strand, within AO356_08955at 2020.111 kb on - strand, within AO356_08955at 2020.423 kb on - strand, within AO356_08955at 2020.785 kb on + strand, within AO356_08955at 2020.786 kb on - strand, within AO356_08955at 2020.915 kb on + strand, within AO356_08955at 2020.918 kb on - strand, within AO356_08955at 2021.194 kb on - strand, within AO356_08955at 2021.313 kb on + strand, within AO356_08955at 2021.314 kb on - strand, within AO356_08955at 2021.314 kb on - strand, within AO356_08955at 2021.316 kb on + strand, within AO356_08955at 2021.316 kb on + strand, within AO356_08955at 2021.316 kb on + strand, within AO356_08955at 2021.316 kb on + strand, within AO356_08955at 2021.316 kb on + strand, within AO356_08955at 2021.317 kb on - strand, within AO356_08955at 2021.364 kb on + strand, within AO356_08955at 2021.649 kb on + strand, within AO356_08955at 2021.649 kb on + strand, within AO356_08955at 2021.661 kb on + strand, within AO356_08955at 2021.661 kb on + strand, within AO356_08955at 2021.957 kb on - strandat 2021.957 kb on - strandat 2022.123 kb on + strandat 2022.124 kb on - strandat 2022.124 kb on - strandat 2022.154 kb on + strandat 2022.207 kb on + strandat 2022.312 kb on + strandat 2022.344 kb on + strandat 2022.344 kb on + strandat 2022.344 kb on + strandat 2022.346 kb on + strandat 2022.382 kb on + strandat 2022.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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2,018,227 - +1.0
2,018,227 - -1.4
2,018,247 - +1.0
2,018,252 - -0.3
2,018,252 - +0.2
2,018,252 - -0.2
2,018,252 - +0.8
2,018,252 - -2.4
2,018,289 - -0.2
2,018,289 - -1.7
2,018,289 - -1.0
2,018,289 - +0.1
2,019,201 - -0.4
2,019,295 - +0.1
2,019,379 - -0.8
2,019,424 - -0.9
2,019,424 - -0.4
2,019,424 - -1.2
2,019,434 - -1.9
2,019,452 - +0.4
2,019,612 - AO356_08955 0.15 -0.5
2,019,612 - AO356_08955 0.15 -1.6
2,019,795 + AO356_08955 0.21 -1.2
2,019,795 + AO356_08955 0.21 -0.7
2,019,795 + AO356_08955 0.21 -0.6
2,019,795 + AO356_08955 0.21 -0.1
2,019,795 + AO356_08955 0.21 +2.0
2,019,795 + AO356_08955 0.21 -1.9
2,019,795 + AO356_08955 0.21 -0.8
2,019,795 + AO356_08955 0.21 -0.9
2,019,796 - AO356_08955 0.21 -0.0
2,019,796 - AO356_08955 0.21 +0.9
2,019,796 - AO356_08955 0.21 -1.5
2,019,796 - AO356_08955 0.21 -0.1
2,019,796 - AO356_08955 0.21 -1.0
2,019,796 - AO356_08955 0.21 +0.1
2,019,988 + AO356_08955 0.28 -1.6
2,019,989 - AO356_08955 0.28 -0.8
2,020,111 - AO356_08955 0.32 -1.6
2,020,423 - AO356_08955 0.43 +0.4
2,020,785 + AO356_08955 0.55 -2.5
2,020,786 - AO356_08955 0.55 -2.9
2,020,915 + AO356_08955 0.59 -1.6
2,020,918 - AO356_08955 0.59 -0.3
2,021,194 - AO356_08955 0.69 -1.4
2,021,313 + AO356_08955 0.73 -0.9
2,021,314 - AO356_08955 0.73 -0.1
2,021,314 - AO356_08955 0.73 -0.4
2,021,316 + AO356_08955 0.73 -1.3
2,021,316 + AO356_08955 0.73 -0.6
2,021,316 + AO356_08955 0.73 -0.9
2,021,316 + AO356_08955 0.73 -0.7
2,021,316 + AO356_08955 0.73 +1.1
2,021,317 - AO356_08955 0.73 -0.6
2,021,364 + AO356_08955 0.74 +1.1
2,021,649 + AO356_08955 0.84 -0.6
2,021,649 + AO356_08955 0.84 -1.6
2,021,661 + AO356_08955 0.84 -2.0
2,021,661 + AO356_08955 0.84 -1.6
2,021,957 - -0.1
2,021,957 - -1.6
2,022,123 + -0.8
2,022,124 - -0.1
2,022,124 - -0.1
2,022,154 + +0.9
2,022,207 + -0.2
2,022,312 + -0.9
2,022,344 + -0.6
2,022,344 + -0.9
2,022,344 + -2.7
2,022,346 + -0.4
2,022,382 + +0.6
2,022,426 + +0.2

Or see this region's nucleotide sequence