Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07695

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07690 and AO356_07695 are separated by 90 nucleotidesAO356_07695 and AO356_07700 are separated by 165 nucleotides AO356_07690: AO356_07690 - amino acid amidase, at 1,709,026 to 1,709,925 _07690 AO356_07695: AO356_07695 - LuxR family transcriptional regulator, at 1,710,016 to 1,710,777 _07695 AO356_07700: AO356_07700 - proline iminopeptidase, at 1,710,943 to 1,711,830 _07700 Position (kb) 1710 1711Strain fitness (log2 ratio) -2 -1 0 1 2at 1709.094 kb on + strandat 1709.094 kb on + strandat 1709.094 kb on + strandat 1709.094 kb on + strandat 1709.095 kb on - strandat 1709.095 kb on - strandat 1709.095 kb on - strandat 1709.147 kb on + strand, within AO356_07690at 1709.147 kb on + strand, within AO356_07690at 1709.147 kb on + strand, within AO356_07690at 1709.148 kb on - strand, within AO356_07690at 1709.148 kb on - strand, within AO356_07690at 1709.294 kb on + strand, within AO356_07690at 1709.294 kb on + strand, within AO356_07690at 1709.295 kb on - strand, within AO356_07690at 1709.329 kb on - strand, within AO356_07690at 1709.378 kb on + strand, within AO356_07690at 1709.402 kb on + strand, within AO356_07690at 1709.402 kb on + strand, within AO356_07690at 1709.468 kb on - strand, within AO356_07690at 1709.468 kb on - strand, within AO356_07690at 1709.615 kb on + strand, within AO356_07690at 1709.615 kb on + strand, within AO356_07690at 1709.615 kb on + strand, within AO356_07690at 1709.738 kb on + strand, within AO356_07690at 1709.789 kb on + strand, within AO356_07690at 1709.789 kb on + strand, within AO356_07690at 1709.789 kb on + strand, within AO356_07690at 1709.789 kb on + strand, within AO356_07690at 1709.790 kb on - strand, within AO356_07690at 1709.790 kb on - strand, within AO356_07690at 1709.799 kb on + strand, within AO356_07690at 1709.800 kb on - strand, within AO356_07690at 1709.800 kb on - strand, within AO356_07690at 1709.868 kb on - strandat 1709.879 kb on + strandat 1709.940 kb on + strandat 1709.946 kb on + strandat 1709.947 kb on - strandat 1709.984 kb on - strandat 1709.999 kb on + strandat 1709.999 kb on + strandat 1709.999 kb on + strandat 1710.021 kb on + strandat 1710.036 kb on - strandat 1710.422 kb on + strand, within AO356_07695at 1710.423 kb on - strand, within AO356_07695at 1710.423 kb on - strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.508 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.551 kb on + strand, within AO356_07695at 1710.552 kb on - strand, within AO356_07695at 1710.592 kb on - strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.656 kb on + strand, within AO356_07695at 1710.657 kb on - strand, within AO356_07695at 1710.657 kb on - strand, within AO356_07695at 1710.662 kb on + strand, within AO356_07695at 1710.662 kb on + strand, within AO356_07695at 1710.663 kb on - strand, within AO356_07695at 1710.663 kb on - strand, within AO356_07695at 1710.683 kb on - strand, within AO356_07695at 1710.709 kb on - strandat 1710.792 kb on + strandat 1710.792 kb on + strandat 1710.795 kb on + strandat 1710.795 kb on + strandat 1710.795 kb on + strandat 1710.821 kb on + strandat 1710.821 kb on + strandat 1710.822 kb on - strandat 1710.822 kb on - strandat 1710.863 kb on + strandat 1710.864 kb on - strandat 1710.864 kb on - strandat 1710.864 kb on - strandat 1710.865 kb on + strandat 1710.865 kb on + strandat 1710.866 kb on - strandat 1710.866 kb on - strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.875 kb on + strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.876 kb on - strandat 1710.881 kb on - strandat 1710.891 kb on - strandat 1710.974 kb on - strandat 1711.009 kb on + strandat 1711.010 kb on - strandat 1711.075 kb on + strand, within AO356_07700at 1711.165 kb on - strand, within AO356_07700at 1711.195 kb on + strand, within AO356_07700at 1711.195 kb on + strand, within AO356_07700at 1711.196 kb on - strand, within AO356_07700at 1711.208 kb on + strand, within AO356_07700at 1711.209 kb on - strand, within AO356_07700at 1711.209 kb on - strand, within AO356_07700at 1711.348 kb on - strand, within AO356_07700at 1711.457 kb on - strand, within AO356_07700at 1711.457 kb on - strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.483 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.558 kb on + strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.559 kb on - strand, within AO356_07700at 1711.591 kb on + strand, within AO356_07700at 1711.727 kb on + strand, within AO356_07700at 1711.727 kb on + strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.728 kb on - strand, within AO356_07700at 1711.769 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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1,709,094 + +0.7
1,709,094 + -0.4
1,709,094 + -0.1
1,709,094 + -0.2
1,709,095 - +0.1
1,709,095 - +0.2
1,709,095 - -0.6
1,709,147 + AO356_07690 0.13 -1.0
1,709,147 + AO356_07690 0.13 -0.6
1,709,147 + AO356_07690 0.13 +0.8
1,709,148 - AO356_07690 0.14 +0.4
1,709,148 - AO356_07690 0.14 +0.5
1,709,294 + AO356_07690 0.30 +2.0
1,709,294 + AO356_07690 0.30 -0.2
1,709,295 - AO356_07690 0.30 -0.3
1,709,329 - AO356_07690 0.34 -0.3
1,709,378 + AO356_07690 0.39 -0.2
1,709,402 + AO356_07690 0.42 +0.6
1,709,402 + AO356_07690 0.42 -0.8
1,709,468 - AO356_07690 0.49 -0.0
1,709,468 - AO356_07690 0.49 -0.5
1,709,615 + AO356_07690 0.65 +1.4
1,709,615 + AO356_07690 0.65 -0.2
1,709,615 + AO356_07690 0.65 -2.3
1,709,738 + AO356_07690 0.79 -1.5
1,709,789 + AO356_07690 0.85 +1.5
1,709,789 + AO356_07690 0.85 -0.3
1,709,789 + AO356_07690 0.85 +1.6
1,709,789 + AO356_07690 0.85 +0.4
1,709,790 - AO356_07690 0.85 -0.0
1,709,790 - AO356_07690 0.85 -0.6
1,709,799 + AO356_07690 0.86 -0.3
1,709,800 - AO356_07690 0.86 +1.0
1,709,800 - AO356_07690 0.86 -1.7
1,709,868 - -0.3
1,709,879 + +0.8
1,709,940 + -1.4
1,709,946 + +0.0
1,709,947 - +0.2
1,709,984 - +0.2
1,709,999 + -1.4
1,709,999 + +0.5
1,709,999 + +0.2
1,710,021 + -0.8
1,710,036 - +0.1
1,710,422 + AO356_07695 0.53 +0.2
1,710,423 - AO356_07695 0.53 +0.5
1,710,423 - AO356_07695 0.53 +0.4
1,710,508 + AO356_07695 0.65 -0.2
1,710,508 + AO356_07695 0.65 +0.8
1,710,508 + AO356_07695 0.65 +0.4
1,710,508 + AO356_07695 0.65 +1.0
1,710,551 + AO356_07695 0.70 +0.1
1,710,551 + AO356_07695 0.70 -0.6
1,710,551 + AO356_07695 0.70 +0.0
1,710,552 - AO356_07695 0.70 +0.1
1,710,592 - AO356_07695 0.76 -0.7
1,710,656 + AO356_07695 0.84 -0.0
1,710,656 + AO356_07695 0.84 -0.4
1,710,656 + AO356_07695 0.84 +0.5
1,710,656 + AO356_07695 0.84 -1.5
1,710,656 + AO356_07695 0.84 +1.6
1,710,657 - AO356_07695 0.84 +0.5
1,710,657 - AO356_07695 0.84 -0.9
1,710,662 + AO356_07695 0.85 -0.7
1,710,662 + AO356_07695 0.85 +0.1
1,710,663 - AO356_07695 0.85 +2.3
1,710,663 - AO356_07695 0.85 -0.7
1,710,683 - AO356_07695 0.88 -0.0
1,710,709 - -1.8
1,710,792 + +0.3
1,710,792 + -0.8
1,710,795 + +0.1
1,710,795 + -0.6
1,710,795 + -1.5
1,710,821 + -0.5
1,710,821 + +0.4
1,710,822 - +0.1
1,710,822 - +1.0
1,710,863 + -0.0
1,710,864 - -0.6
1,710,864 - +0.6
1,710,864 - +1.1
1,710,865 + -2.1
1,710,865 + -0.2
1,710,866 - +0.8
1,710,866 - +1.2
1,710,875 + -0.3
1,710,875 + -1.9
1,710,875 + +0.3
1,710,875 + -0.4
1,710,876 - +1.0
1,710,876 - -1.3
1,710,876 - -0.4
1,710,876 - -1.6
1,710,881 - +0.9
1,710,891 - +0.3
1,710,974 - +0.7
1,711,009 + -1.0
1,711,010 - +1.3
1,711,075 + AO356_07700 0.15 +0.2
1,711,165 - AO356_07700 0.25 +1.5
1,711,195 + AO356_07700 0.28 +0.2
1,711,195 + AO356_07700 0.28 +1.6
1,711,196 - AO356_07700 0.28 -0.8
1,711,208 + AO356_07700 0.30 +0.2
1,711,209 - AO356_07700 0.30 +2.0
1,711,209 - AO356_07700 0.30 +0.3
1,711,348 - AO356_07700 0.46 +1.5
1,711,457 - AO356_07700 0.58 -0.6
1,711,457 - AO356_07700 0.58 -0.5
1,711,483 + AO356_07700 0.61 +0.4
1,711,483 + AO356_07700 0.61 +1.8
1,711,483 + AO356_07700 0.61 +0.3
1,711,558 + AO356_07700 0.69 +0.3
1,711,558 + AO356_07700 0.69 -0.2
1,711,558 + AO356_07700 0.69 +1.4
1,711,558 + AO356_07700 0.69 -0.2
1,711,558 + AO356_07700 0.69 +0.3
1,711,559 - AO356_07700 0.69 -0.1
1,711,559 - AO356_07700 0.69 +0.6
1,711,559 - AO356_07700 0.69 -0.3
1,711,559 - AO356_07700 0.69 +0.1
1,711,559 - AO356_07700 0.69 -0.4
1,711,559 - AO356_07700 0.69 +0.3
1,711,559 - AO356_07700 0.69 -1.2
1,711,591 + AO356_07700 0.73 -0.1
1,711,727 + AO356_07700 0.88 +0.4
1,711,727 + AO356_07700 0.88 +0.6
1,711,728 - AO356_07700 0.88 -0.1
1,711,728 - AO356_07700 0.88 -2.4
1,711,728 - AO356_07700 0.88 -0.8
1,711,728 - AO356_07700 0.88 -0.6
1,711,728 - AO356_07700 0.88 -0.7
1,711,728 - AO356_07700 0.88 -0.3
1,711,728 - AO356_07700 0.88 +0.5
1,711,769 - -0.4

Or see this region's nucleotide sequence