Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07190

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07185 and AO356_07190 are separated by 294 nucleotidesAO356_07190 and AO356_07195 are separated by 283 nucleotides AO356_07185: AO356_07185 - 5-dehydro-4-deoxyglucarate dehydratase, at 1,584,903 to 1,585,814 _07185 AO356_07190: AO356_07190 - hypothetical protein, at 1,586,109 to 1,586,492 _07190 AO356_07195: AO356_07195 - GntR family transcriptional regulator, at 1,586,776 to 1,587,522 _07195 Position (kb) 1586 1587Strain fitness (log2 ratio) -2 -1 0 1at 1585.135 kb on + strand, within AO356_07185at 1585.135 kb on + strand, within AO356_07185at 1585.136 kb on - strand, within AO356_07185at 1585.136 kb on - strand, within AO356_07185at 1585.136 kb on - strand, within AO356_07185at 1585.136 kb on - strand, within AO356_07185at 1585.136 kb on - strand, within AO356_07185at 1585.184 kb on - strand, within AO356_07185at 1585.318 kb on + strand, within AO356_07185at 1585.318 kb on + strand, within AO356_07185at 1585.319 kb on - strand, within AO356_07185at 1585.393 kb on + strand, within AO356_07185at 1585.393 kb on + strand, within AO356_07185at 1585.394 kb on - strand, within AO356_07185at 1585.394 kb on - strand, within AO356_07185at 1585.394 kb on - strand, within AO356_07185at 1585.474 kb on + strand, within AO356_07185at 1585.475 kb on - strand, within AO356_07185at 1585.718 kb on - strand, within AO356_07185at 1585.718 kb on - strand, within AO356_07185at 1585.815 kb on + strandat 1585.816 kb on - strandat 1585.898 kb on - strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.051 kb on + strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.052 kb on - strandat 1586.055 kb on + strandat 1586.055 kb on + strandat 1586.056 kb on - strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.071 kb on + strandat 1586.072 kb on - strandat 1586.394 kb on + strand, within AO356_07190at 1586.394 kb on + strand, within AO356_07190at 1586.394 kb on + strand, within AO356_07190at 1586.395 kb on - strand, within AO356_07190at 1586.445 kb on + strand, within AO356_07190at 1586.445 kb on + strand, within AO356_07190at 1586.454 kb on + strandat 1586.455 kb on - strandat 1586.455 kb on - strandat 1586.455 kb on - strandat 1586.490 kb on + strandat 1586.620 kb on - strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.637 kb on + strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.638 kb on - strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.641 kb on + strandat 1586.642 kb on - strandat 1586.642 kb on - strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.643 kb on + strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.644 kb on - strandat 1586.705 kb on + strandat 1586.891 kb on + strand, within AO356_07195at 1586.891 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.927 kb on + strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1586.928 kb on - strand, within AO356_07195at 1587.020 kb on + strand, within AO356_07195at 1587.409 kb on - strand, within AO356_07195

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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1,585,135 + AO356_07185 0.25 -1.8
1,585,135 + AO356_07185 0.25 -0.2
1,585,136 - AO356_07185 0.26 -0.0
1,585,136 - AO356_07185 0.26 +0.5
1,585,136 - AO356_07185 0.26 -0.2
1,585,136 - AO356_07185 0.26 +0.5
1,585,136 - AO356_07185 0.26 -0.7
1,585,184 - AO356_07185 0.31 -1.5
1,585,318 + AO356_07185 0.46 +0.7
1,585,318 + AO356_07185 0.46 +0.6
1,585,319 - AO356_07185 0.46 -0.8
1,585,393 + AO356_07185 0.54 -0.2
1,585,393 + AO356_07185 0.54 -1.6
1,585,394 - AO356_07185 0.54 -1.1
1,585,394 - AO356_07185 0.54 -0.3
1,585,394 - AO356_07185 0.54 +0.6
1,585,474 + AO356_07185 0.63 -0.7
1,585,475 - AO356_07185 0.63 +1.2
1,585,718 - AO356_07185 0.89 +0.0
1,585,718 - AO356_07185 0.89 -0.4
1,585,815 + -0.6
1,585,816 - -1.0
1,585,898 - -0.4
1,586,051 + +0.2
1,586,051 + -0.9
1,586,051 + +1.3
1,586,051 + +1.6
1,586,051 + +1.2
1,586,051 + -0.4
1,586,052 - -0.1
1,586,052 - -0.5
1,586,052 - -0.5
1,586,052 - -1.2
1,586,052 - -0.8
1,586,052 - -0.0
1,586,052 - +0.2
1,586,052 - -0.0
1,586,052 - +0.1
1,586,055 + +1.1
1,586,055 + -0.1
1,586,056 - +1.4
1,586,071 + +0.3
1,586,071 + +1.6
1,586,071 + +0.2
1,586,071 + -0.0
1,586,071 + +0.4
1,586,072 - +0.3
1,586,394 + AO356_07190 0.74 +0.3
1,586,394 + AO356_07190 0.74 -1.5
1,586,394 + AO356_07190 0.74 -1.8
1,586,395 - AO356_07190 0.74 +0.2
1,586,445 + AO356_07190 0.88 -1.0
1,586,445 + AO356_07190 0.88 -0.3
1,586,454 + +1.3
1,586,455 - +1.6
1,586,455 - -0.0
1,586,455 - +0.0
1,586,490 + -0.4
1,586,620 - +0.7
1,586,637 + +0.3
1,586,637 + -0.2
1,586,637 + -0.7
1,586,637 + +0.2
1,586,637 + -1.0
1,586,637 + +0.0
1,586,637 + +0.8
1,586,637 + +0.1
1,586,638 - +1.0
1,586,638 - -0.8
1,586,638 - -0.8
1,586,638 - -0.1
1,586,638 - +0.2
1,586,641 + +0.3
1,586,641 + +0.9
1,586,641 + +1.3
1,586,641 + -0.9
1,586,641 + +0.1
1,586,642 - +0.2
1,586,642 - +0.7
1,586,643 + +0.4
1,586,643 + +0.1
1,586,643 + -0.0
1,586,643 + +0.0
1,586,643 + +0.1
1,586,643 + +0.2
1,586,643 + -1.3
1,586,644 - +0.3
1,586,644 - -0.5
1,586,644 - +1.0
1,586,644 - -0.8
1,586,705 + +0.5
1,586,891 + AO356_07195 0.15 +0.3
1,586,891 + AO356_07195 0.15 -0.9
1,586,927 + AO356_07195 0.20 +1.7
1,586,927 + AO356_07195 0.20 -0.1
1,586,927 + AO356_07195 0.20 -0.5
1,586,927 + AO356_07195 0.20 +0.9
1,586,927 + AO356_07195 0.20 +0.1
1,586,927 + AO356_07195 0.20 -0.5
1,586,927 + AO356_07195 0.20 -0.8
1,586,927 + AO356_07195 0.20 +1.0
1,586,927 + AO356_07195 0.20 -0.4
1,586,927 + AO356_07195 0.20 +1.5
1,586,927 + AO356_07195 0.20 +0.3
1,586,927 + AO356_07195 0.20 +0.1
1,586,928 - AO356_07195 0.20 -0.7
1,586,928 - AO356_07195 0.20 +1.5
1,586,928 - AO356_07195 0.20 -0.2
1,586,928 - AO356_07195 0.20 -0.7
1,587,020 + AO356_07195 0.33 -0.2
1,587,409 - AO356_07195 0.85 +0.4

Or see this region's nucleotide sequence