Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05660 and AO356_05665 are separated by 46 nucleotides AO356_05665 and AO356_05670 are separated by 8 nucleotides AO356_05670 and AO356_05675 are separated by 83 nucleotides AO356_05675 and AO356_05680 are separated by 71 nucleotides
AO356_05660: AO356_05660 - cytochrome D ubiquinol oxidase subunit II, at 1,265,541 to 1,266,659
_05660
AO356_05665: AO356_05665 - recombinase RecX, at 1,266,706 to 1,267,173
_05665
AO356_05670: AO356_05670 - recombinase RecA, at 1,267,182 to 1,268,234
_05670
AO356_05675: AO356_05675 - damage-inducible protein CinA, at 1,268,318 to 1,268,818
_05675
AO356_05680: AO356_05680 - lysozyme, at 1,268,890 to 1,269,426
_05680
Position (kb)
1267
1268
1269 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1266.231 kb on - strand, within AO356_05660 at 1266.258 kb on + strand, within AO356_05660 at 1266.258 kb on + strand, within AO356_05660 at 1266.258 kb on + strand, within AO356_05660 at 1266.258 kb on + strand, within AO356_05660 at 1266.259 kb on - strand, within AO356_05660 at 1266.259 kb on - strand, within AO356_05660 at 1266.297 kb on + strand, within AO356_05660 at 1266.297 kb on + strand, within AO356_05660 at 1266.298 kb on - strand, within AO356_05660 at 1266.298 kb on - strand, within AO356_05660 at 1266.298 kb on - strand, within AO356_05660 at 1266.298 kb on - strand, within AO356_05660 at 1266.336 kb on + strand, within AO356_05660 at 1266.400 kb on + strand, within AO356_05660 at 1266.401 kb on - strand, within AO356_05660 at 1266.401 kb on - strand, within AO356_05660 at 1266.401 kb on - strand, within AO356_05660 at 1266.430 kb on + strand, within AO356_05660 at 1266.430 kb on + strand, within AO356_05660 at 1266.431 kb on - strand, within AO356_05660 at 1266.477 kb on + strand, within AO356_05660 at 1266.477 kb on + strand, within AO356_05660 at 1266.477 kb on + strand, within AO356_05660 at 1266.478 kb on - strand, within AO356_05660 at 1266.478 kb on - strand, within AO356_05660 at 1266.478 kb on - strand, within AO356_05660 at 1266.478 kb on - strand, within AO356_05660 at 1266.478 kb on - strand, within AO356_05660 at 1266.533 kb on + strand, within AO356_05660 at 1266.533 kb on + strand, within AO356_05660 at 1266.579 kb on + strand at 1266.579 kb on + strand at 1266.579 kb on + strand at 1266.579 kb on + strand at 1266.580 kb on - strand at 1266.666 kb on - strand at 1266.689 kb on + strand at 1266.704 kb on - strand at 1266.707 kb on + strand at 1266.708 kb on - strand at 1266.708 kb on - strand at 1266.708 kb on - strand at 1267.080 kb on + strand, within AO356_05665 at 1267.360 kb on + strand, within AO356_05670 at 1267.361 kb on - strand, within AO356_05670 at 1267.366 kb on + strand, within AO356_05670 at 1267.367 kb on - strand, within AO356_05670 at 1267.432 kb on + strand, within AO356_05670 at 1267.432 kb on + strand, within AO356_05670 at 1267.432 kb on + strand, within AO356_05670 at 1267.433 kb on - strand, within AO356_05670 at 1268.044 kb on + strand, within AO356_05670 at 1268.130 kb on - strand at 1268.248 kb on + strand at 1268.248 kb on + strand at 1268.279 kb on - strand at 1268.279 kb on - strand at 1268.280 kb on + strand at 1268.281 kb on - strand at 1268.295 kb on - strand at 1268.339 kb on + strand at 1268.339 kb on + strand at 1268.465 kb on + strand, within AO356_05675 at 1268.466 kb on - strand, within AO356_05675 at 1268.466 kb on - strand, within AO356_05675 at 1268.466 kb on - strand, within AO356_05675 at 1268.466 kb on - strand, within AO356_05675 at 1268.658 kb on + strand, within AO356_05675 at 1268.658 kb on + strand, within AO356_05675 at 1268.659 kb on - strand, within AO356_05675 at 1268.667 kb on + strand, within AO356_05675 at 1268.667 kb on + strand, within AO356_05675 at 1268.668 kb on - strand, within AO356_05675 at 1268.855 kb on + strand at 1268.855 kb on + strand at 1268.856 kb on - strand at 1268.856 kb on - strand at 1268.908 kb on + strand at 1268.912 kb on + strand at 1268.912 kb on + strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1268.913 kb on - strand at 1269.111 kb on + strand, within AO356_05680 at 1269.111 kb on + strand, within AO356_05680 at 1269.112 kb on - strand, within AO356_05680 at 1269.112 kb on - strand, within AO356_05680 at 1269.112 kb on - strand, within AO356_05680
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 1,266,231 - AO356_05660 0.62 -1.3 1,266,258 + AO356_05660 0.64 -0.6 1,266,258 + AO356_05660 0.64 -0.2 1,266,258 + AO356_05660 0.64 +0.1 1,266,258 + AO356_05660 0.64 +0.6 1,266,259 - AO356_05660 0.64 -1.2 1,266,259 - AO356_05660 0.64 -0.7 1,266,297 + AO356_05660 0.68 +0.5 1,266,297 + AO356_05660 0.68 +0.8 1,266,298 - AO356_05660 0.68 -0.4 1,266,298 - AO356_05660 0.68 -0.9 1,266,298 - AO356_05660 0.68 +0.7 1,266,298 - AO356_05660 0.68 +0.1 1,266,336 + AO356_05660 0.71 +0.4 1,266,400 + AO356_05660 0.77 -0.1 1,266,401 - AO356_05660 0.77 +0.1 1,266,401 - AO356_05660 0.77 -0.6 1,266,401 - AO356_05660 0.77 +0.7 1,266,430 + AO356_05660 0.79 -0.9 1,266,430 + AO356_05660 0.79 +0.2 1,266,431 - AO356_05660 0.80 +0.9 1,266,477 + AO356_05660 0.84 -0.2 1,266,477 + AO356_05660 0.84 -0.0 1,266,477 + AO356_05660 0.84 +3.1 1,266,478 - AO356_05660 0.84 +0.1 1,266,478 - AO356_05660 0.84 -0.3 1,266,478 - AO356_05660 0.84 -0.3 1,266,478 - AO356_05660 0.84 +0.4 1,266,478 - AO356_05660 0.84 +1.1 1,266,533 + AO356_05660 0.89 -1.1 1,266,533 + AO356_05660 0.89 -0.6 1,266,579 + +0.4 1,266,579 + -0.1 1,266,579 + +0.7 1,266,579 + +0.2 1,266,580 - -0.4 1,266,666 - -0.3 1,266,689 + +0.1 1,266,704 - +3.6 1,266,707 + -0.0 1,266,708 - -0.3 1,266,708 - +0.7 1,266,708 - +0.2 1,267,080 + AO356_05665 0.80 -0.1 1,267,360 + AO356_05670 0.17 -0.9 1,267,361 - AO356_05670 0.17 -0.9 1,267,366 + AO356_05670 0.17 +0.7 1,267,367 - AO356_05670 0.18 -0.1 1,267,432 + AO356_05670 0.24 +0.3 1,267,432 + AO356_05670 0.24 -1.1 1,267,432 + AO356_05670 0.24 -1.4 1,267,433 - AO356_05670 0.24 +1.1 1,268,044 + AO356_05670 0.82 +0.1 1,268,130 - -1.6 1,268,248 + -1.3 1,268,248 + +0.5 1,268,279 - +0.2 1,268,279 - +0.9 1,268,280 + -1.5 1,268,281 - +0.1 1,268,295 - +0.4 1,268,339 + -0.3 1,268,339 + -1.7 1,268,465 + AO356_05675 0.29 +1.7 1,268,466 - AO356_05675 0.30 +1.8 1,268,466 - AO356_05675 0.30 -0.0 1,268,466 - AO356_05675 0.30 +0.6 1,268,466 - AO356_05675 0.30 -0.4 1,268,658 + AO356_05675 0.68 +1.2 1,268,658 + AO356_05675 0.68 -0.8 1,268,659 - AO356_05675 0.68 -1.0 1,268,667 + AO356_05675 0.70 +0.7 1,268,667 + AO356_05675 0.70 -1.2 1,268,668 - AO356_05675 0.70 -0.0 1,268,855 + +0.0 1,268,855 + +0.7 1,268,856 - +0.3 1,268,856 - -0.7 1,268,908 + -0.4 1,268,912 + -0.2 1,268,912 + -0.8 1,268,913 - +2.6 1,268,913 - -0.7 1,268,913 - -1.0 1,268,913 - +0.9 1,268,913 - +0.4 1,268,913 - +0.3 1,268,913 - +0.2 1,268,913 - -0.1 1,269,111 + AO356_05680 0.41 +0.1 1,269,111 + AO356_05680 0.41 +1.1 1,269,112 - AO356_05680 0.41 +0.1 1,269,112 - AO356_05680 0.41 -0.5 1,269,112 - AO356_05680 0.41 -1.1
Or see this region's nucleotide sequence