Experiment: Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03955 and AO356_03960 overlap by 8 nucleotides AO356_03960 and AO356_03965 overlap by 4 nucleotides AO356_03965 and AO356_03970 are separated by 179 nucleotides
AO356_03955: AO356_03955 - hypothetical protein, at 881,132 to 882,112
_03955
AO356_03960: AO356_03960 - hypothetical protein, at 882,105 to 882,863
_03960
AO356_03965: AO356_03965 - aminotransferase, at 882,860 to 883,978
_03965
AO356_03970: AO356_03970 - AAA family ATPase, at 884,158 to 885,717
_03970
Position (kb) 882
883
884 Strain fitness (log2 ratio) -2
-1
0
1
2 at 881.907 kb on + strand, within AO356_03955 at 881.908 kb on - strand, within AO356_03955 at 881.964 kb on + strand, within AO356_03955 at 881.965 kb on - strand, within AO356_03955 at 881.965 kb on - strand, within AO356_03955 at 881.965 kb on - strand, within AO356_03955 at 881.965 kb on - strand, within AO356_03955 at 881.965 kb on - strand, within AO356_03955 at 882.002 kb on + strand, within AO356_03955 at 882.061 kb on + strand at 882.061 kb on + strand at 882.061 kb on + strand at 882.061 kb on + strand at 882.061 kb on + strand at 882.061 kb on + strand at 882.061 kb on + strand at 882.062 kb on - strand at 882.062 kb on - strand at 882.062 kb on - strand at 882.062 kb on - strand at 882.070 kb on + strand at 882.070 kb on + strand at 882.071 kb on - strand at 882.163 kb on + strand at 882.163 kb on + strand at 882.163 kb on + strand at 882.163 kb on + strand at 882.163 kb on + strand at 882.164 kb on - strand at 882.164 kb on - strand at 882.164 kb on - strand at 882.260 kb on + strand, within AO356_03960 at 882.263 kb on + strand, within AO356_03960 at 882.263 kb on + strand, within AO356_03960 at 882.263 kb on + strand, within AO356_03960 at 882.264 kb on - strand, within AO356_03960 at 882.264 kb on - strand, within AO356_03960 at 882.264 kb on - strand, within AO356_03960 at 882.264 kb on - strand, within AO356_03960 at 882.264 kb on - strand, within AO356_03960 at 882.280 kb on - strand, within AO356_03960 at 882.293 kb on - strand, within AO356_03960 at 882.323 kb on - strand, within AO356_03960 at 882.323 kb on - strand, within AO356_03960 at 882.429 kb on + strand, within AO356_03960 at 882.429 kb on + strand, within AO356_03960 at 882.430 kb on - strand, within AO356_03960 at 882.599 kb on + strand, within AO356_03960 at 882.600 kb on - strand, within AO356_03960 at 882.600 kb on - strand, within AO356_03960 at 882.727 kb on + strand, within AO356_03960 at 882.727 kb on + strand, within AO356_03960 at 882.727 kb on + strand, within AO356_03960 at 882.727 kb on + strand, within AO356_03960 at 882.727 kb on + strand, within AO356_03960 at 882.728 kb on - strand, within AO356_03960 at 882.766 kb on + strand, within AO356_03960 at 882.766 kb on + strand, within AO356_03960 at 882.766 kb on + strand, within AO356_03960 at 882.775 kb on + strand, within AO356_03960 at 882.775 kb on + strand, within AO356_03960 at 882.776 kb on - strand, within AO356_03960 at 882.776 kb on - strand, within AO356_03960 at 882.776 kb on - strand, within AO356_03960 at 882.787 kb on + strand, within AO356_03960 at 882.787 kb on + strand, within AO356_03960 at 882.787 kb on + strand, within AO356_03960 at 882.788 kb on - strand at 882.788 kb on - strand at 882.788 kb on - strand at 882.788 kb on - strand at 882.848 kb on + strand at 882.849 kb on - strand at 882.885 kb on - strand at 882.928 kb on - strand at 882.944 kb on + strand at 882.944 kb on + strand at 882.945 kb on - strand at 882.963 kb on + strand at 882.963 kb on + strand at 882.963 kb on + strand at 882.963 kb on + strand at 882.964 kb on - strand at 882.964 kb on - strand at 882.964 kb on - strand at 882.964 kb on - strand at 882.964 kb on - strand at 882.964 kb on - strand at 883.008 kb on + strand, within AO356_03965 at 883.026 kb on - strand, within AO356_03965 at 883.041 kb on + strand, within AO356_03965 at 883.041 kb on + strand, within AO356_03965 at 883.081 kb on - strand, within AO356_03965 at 883.081 kb on - strand, within AO356_03965 at 883.081 kb on - strand, within AO356_03965 at 883.134 kb on + strand, within AO356_03965 at 883.134 kb on + strand, within AO356_03965 at 883.135 kb on - strand, within AO356_03965 at 883.212 kb on + strand, within AO356_03965 at 883.212 kb on + strand, within AO356_03965 at 883.213 kb on - strand, within AO356_03965 at 883.254 kb on + strand, within AO356_03965 at 883.254 kb on + strand, within AO356_03965 at 883.254 kb on + strand, within AO356_03965 at 883.255 kb on - strand, within AO356_03965 at 883.259 kb on + strand, within AO356_03965 at 883.260 kb on - strand, within AO356_03965 at 883.260 kb on - strand, within AO356_03965 at 883.260 kb on - strand, within AO356_03965 at 883.260 kb on - strand, within AO356_03965 at 883.359 kb on + strand, within AO356_03965 at 883.360 kb on - strand, within AO356_03965 at 883.360 kb on - strand, within AO356_03965 at 883.417 kb on + strand, within AO356_03965 at 883.417 kb on + strand, within AO356_03965 at 883.417 kb on + strand, within AO356_03965 at 883.417 kb on + strand, within AO356_03965 at 883.417 kb on + strand, within AO356_03965 at 883.418 kb on - strand, within AO356_03965 at 883.418 kb on - strand, within AO356_03965 at 883.518 kb on + strand, within AO356_03965 at 883.518 kb on + strand, within AO356_03965 at 883.518 kb on + strand, within AO356_03965 at 883.518 kb on + strand, within AO356_03965 at 883.518 kb on + strand, within AO356_03965 at 883.519 kb on - strand, within AO356_03965 at 883.519 kb on - strand, within AO356_03965 at 883.519 kb on - strand, within AO356_03965 at 883.522 kb on + strand, within AO356_03965 at 883.522 kb on + strand, within AO356_03965 at 883.523 kb on - strand, within AO356_03965 at 883.523 kb on - strand, within AO356_03965 at 883.523 kb on - strand, within AO356_03965 at 883.536 kb on + strand, within AO356_03965 at 883.537 kb on - strand, within AO356_03965 at 883.584 kb on + strand, within AO356_03965 at 883.585 kb on - strand, within AO356_03965 at 883.734 kb on + strand, within AO356_03965 at 883.837 kb on - strand, within AO356_03965 at 883.837 kb on - strand, within AO356_03965 at 883.894 kb on + strand at 883.894 kb on + strand at 883.894 kb on + strand at 883.894 kb on + strand at 883.917 kb on + strand at 883.917 kb on + strand at 883.917 kb on + strand at 883.943 kb on + strand at 883.943 kb on + strand at 883.944 kb on - strand at 883.982 kb on + strand at 883.982 kb on + strand at 883.982 kb on + strand at 883.982 kb on + strand at 883.983 kb on - strand at 883.983 kb on - strand at 883.987 kb on + strand at 884.054 kb on - strand at 884.054 kb on - strand at 884.054 kb on - strand at 884.160 kb on - strand at 884.183 kb on + strand at 884.183 kb on + strand at 884.183 kb on + strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.196 kb on + strand at 884.196 kb on + strand at 884.264 kb on + strand at 884.264 kb on + strand at 884.265 kb on - strand at 884.373 kb on + strand, within AO356_03970 at 884.462 kb on + strand, within AO356_03970 at 884.463 kb on - strand, within AO356_03970 at 884.621 kb on + strand, within AO356_03970 at 884.621 kb on + strand, within AO356_03970 at 884.621 kb on + strand, within AO356_03970 at 884.621 kb on + strand, within AO356_03970 at 884.702 kb on + strand, within AO356_03970 at 884.702 kb on + strand, within AO356_03970 at 884.702 kb on + strand, within AO356_03970 at 884.702 kb on + strand, within AO356_03970 at 884.702 kb on + strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970 at 884.703 kb on - strand, within AO356_03970
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 0.08 mM remove 881,907 + AO356_03955 0.79 +1.5 881,908 - AO356_03955 0.79 -0.1 881,964 + AO356_03955 0.85 -0.2 881,965 - AO356_03955 0.85 -0.5 881,965 - AO356_03955 0.85 +0.2 881,965 - AO356_03955 0.85 +0.3 881,965 - AO356_03955 0.85 -0.3 881,965 - AO356_03955 0.85 -0.0 882,002 + AO356_03955 0.89 +0.5 882,061 + +1.0 882,061 + -0.8 882,061 + -0.3 882,061 + -0.7 882,061 + +0.2 882,061 + -1.9 882,061 + +0.2 882,062 - +1.0 882,062 - +0.2 882,062 - +0.0 882,062 - +1.0 882,070 + -0.6 882,070 + +0.3 882,071 - -0.9 882,163 + +1.5 882,163 + +0.6 882,163 + +0.5 882,163 + -1.3 882,163 + -1.3 882,164 - +0.3 882,164 - -0.1 882,164 - +0.3 882,260 + AO356_03960 0.20 -0.4 882,263 + AO356_03960 0.21 +1.1 882,263 + AO356_03960 0.21 +0.5 882,263 + AO356_03960 0.21 -0.0 882,264 - AO356_03960 0.21 +0.6 882,264 - AO356_03960 0.21 -2.0 882,264 - AO356_03960 0.21 +1.0 882,264 - AO356_03960 0.21 +1.1 882,264 - AO356_03960 0.21 -0.4 882,280 - AO356_03960 0.23 +0.4 882,293 - AO356_03960 0.25 +2.0 882,323 - AO356_03960 0.29 +0.1 882,323 - AO356_03960 0.29 -0.4 882,429 + AO356_03960 0.43 -0.0 882,429 + AO356_03960 0.43 +0.2 882,430 - AO356_03960 0.43 +2.0 882,599 + AO356_03960 0.65 -1.1 882,600 - AO356_03960 0.65 -0.6 882,600 - AO356_03960 0.65 -0.7 882,727 + AO356_03960 0.82 -2.6 882,727 + AO356_03960 0.82 -0.0 882,727 + AO356_03960 0.82 +0.2 882,727 + AO356_03960 0.82 +0.8 882,727 + AO356_03960 0.82 -0.7 882,728 - AO356_03960 0.82 +0.1 882,766 + AO356_03960 0.87 +0.4 882,766 + AO356_03960 0.87 +0.2 882,766 + AO356_03960 0.87 -0.4 882,775 + AO356_03960 0.88 -0.2 882,775 + AO356_03960 0.88 +0.7 882,776 - AO356_03960 0.88 +0.2 882,776 - AO356_03960 0.88 -0.3 882,776 - AO356_03960 0.88 -0.7 882,787 + AO356_03960 0.90 +0.4 882,787 + AO356_03960 0.90 +1.6 882,787 + AO356_03960 0.90 +1.1 882,788 - -0.5 882,788 - +2.4 882,788 - -0.6 882,788 - -0.4 882,848 + -1.7 882,849 - -0.6 882,885 - +0.3 882,928 - -0.2 882,944 + +1.4 882,944 + -0.2 882,945 - -0.1 882,963 + +1.2 882,963 + -0.9 882,963 + -0.7 882,963 + +0.7 882,964 - -0.3 882,964 - +0.9 882,964 - -1.6 882,964 - -0.6 882,964 - -0.4 882,964 - -0.4 883,008 + AO356_03965 0.13 -0.9 883,026 - AO356_03965 0.15 +0.0 883,041 + AO356_03965 0.16 +0.2 883,041 + AO356_03965 0.16 -0.1 883,081 - AO356_03965 0.20 +0.3 883,081 - AO356_03965 0.20 -0.6 883,081 - AO356_03965 0.20 +1.4 883,134 + AO356_03965 0.24 -0.6 883,134 + AO356_03965 0.24 +0.1 883,135 - AO356_03965 0.25 +0.2 883,212 + AO356_03965 0.31 +1.1 883,212 + AO356_03965 0.31 -1.1 883,213 - AO356_03965 0.32 +0.2 883,254 + AO356_03965 0.35 +0.3 883,254 + AO356_03965 0.35 -1.0 883,254 + AO356_03965 0.35 +1.4 883,255 - AO356_03965 0.35 -0.7 883,259 + AO356_03965 0.36 -0.1 883,260 - AO356_03965 0.36 -0.5 883,260 - AO356_03965 0.36 +0.2 883,260 - AO356_03965 0.36 +1.6 883,260 - AO356_03965 0.36 +0.8 883,359 + AO356_03965 0.45 -0.9 883,360 - AO356_03965 0.45 +0.1 883,360 - AO356_03965 0.45 +0.8 883,417 + AO356_03965 0.50 +0.4 883,417 + AO356_03965 0.50 -0.4 883,417 + AO356_03965 0.50 +0.9 883,417 + AO356_03965 0.50 -0.5 883,417 + AO356_03965 0.50 -0.4 883,418 - AO356_03965 0.50 +0.2 883,418 - AO356_03965 0.50 +0.3 883,518 + AO356_03965 0.59 -0.7 883,518 + AO356_03965 0.59 +0.2 883,518 + AO356_03965 0.59 +0.2 883,518 + AO356_03965 0.59 -0.6 883,518 + AO356_03965 0.59 -2.7 883,519 - AO356_03965 0.59 -0.2 883,519 - AO356_03965 0.59 -0.3 883,519 - AO356_03965 0.59 -0.6 883,522 + AO356_03965 0.59 -0.2 883,522 + AO356_03965 0.59 +0.1 883,523 - AO356_03965 0.59 +1.2 883,523 - AO356_03965 0.59 +0.0 883,523 - AO356_03965 0.59 +0.1 883,536 + AO356_03965 0.60 +1.3 883,537 - AO356_03965 0.61 -0.8 883,584 + AO356_03965 0.65 +0.2 883,585 - AO356_03965 0.65 +0.4 883,734 + AO356_03965 0.78 -0.8 883,837 - AO356_03965 0.87 -0.4 883,837 - AO356_03965 0.87 +0.6 883,894 + +1.4 883,894 + -0.2 883,894 + +1.2 883,894 + +0.3 883,917 + -0.4 883,917 + +0.2 883,917 + -0.9 883,943 + +1.4 883,943 + +0.4 883,944 - -0.1 883,982 + -0.5 883,982 + +0.2 883,982 + +0.1 883,982 + +0.2 883,983 - -1.1 883,983 - +2.1 883,987 + +0.7 884,054 - +1.6 884,054 - -0.9 884,054 - -0.7 884,160 - +0.1 884,183 + +0.8 884,183 + +0.2 884,183 + +1.4 884,184 - -0.7 884,184 - +0.3 884,184 - -0.2 884,184 - -0.7 884,184 - +0.5 884,184 - +0.3 884,196 + +2.4 884,196 + +0.5 884,264 + -0.2 884,264 + -0.9 884,265 - +0.3 884,373 + AO356_03970 0.14 +1.0 884,462 + AO356_03970 0.19 +1.1 884,463 - AO356_03970 0.20 -0.7 884,621 + AO356_03970 0.30 -0.2 884,621 + AO356_03970 0.30 +0.2 884,621 + AO356_03970 0.30 -0.5 884,621 + AO356_03970 0.30 +1.2 884,702 + AO356_03970 0.35 -0.5 884,702 + AO356_03970 0.35 +1.3 884,702 + AO356_03970 0.35 +0.8 884,702 + AO356_03970 0.35 +0.1 884,702 + AO356_03970 0.35 +0.7 884,703 - AO356_03970 0.35 +0.8 884,703 - AO356_03970 0.35 -1.0 884,703 - AO356_03970 0.35 +0.7 884,703 - AO356_03970 0.35 -0.4 884,703 - AO356_03970 0.35 -0.7 884,703 - AO356_03970 0.35 +0.1
Or see this region's nucleotide sequence