Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01395

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01390 and AO356_01395 overlap by 1 nucleotidesAO356_01395 and AO356_01400 are separated by 298 nucleotides AO356_01390: AO356_01390 - tRNA 2-selenouridine synthase, at 320,821 to 321,924 _01390 AO356_01395: AO356_01395 - selenide, water dikinase, at 321,924 to 322,958 _01395 AO356_01400: AO356_01400 - ion channel protein Tsx, at 323,257 to 324,207 _01400 Position (kb) 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2at 320.933 kb on + strand, within AO356_01390at 320.934 kb on - strand, within AO356_01390at 320.936 kb on + strand, within AO356_01390at 321.124 kb on + strand, within AO356_01390at 321.124 kb on + strand, within AO356_01390at 321.124 kb on + strand, within AO356_01390at 321.125 kb on - strand, within AO356_01390at 321.125 kb on - strand, within AO356_01390at 321.125 kb on - strand, within AO356_01390at 321.158 kb on + strand, within AO356_01390at 321.158 kb on + strand, within AO356_01390at 321.158 kb on + strand, within AO356_01390at 321.158 kb on + strand, within AO356_01390at 321.159 kb on - strand, within AO356_01390at 321.159 kb on - strand, within AO356_01390at 321.159 kb on - strand, within AO356_01390at 321.413 kb on + strand, within AO356_01390at 321.575 kb on + strand, within AO356_01390at 321.644 kb on + strand, within AO356_01390at 321.644 kb on + strand, within AO356_01390at 321.644 kb on + strand, within AO356_01390at 321.645 kb on - strand, within AO356_01390at 321.767 kb on + strand, within AO356_01390at 321.767 kb on + strand, within AO356_01390at 322.121 kb on - strand, within AO356_01395at 322.121 kb on - strand, within AO356_01395at 322.121 kb on - strand, within AO356_01395at 322.121 kb on - strand, within AO356_01395at 322.121 kb on - strand, within AO356_01395at 322.129 kb on + strand, within AO356_01395at 322.130 kb on - strand, within AO356_01395at 322.130 kb on - strand, within AO356_01395at 322.171 kb on + strand, within AO356_01395at 322.171 kb on + strand, within AO356_01395at 322.171 kb on + strand, within AO356_01395at 322.171 kb on + strand, within AO356_01395at 322.172 kb on - strand, within AO356_01395at 322.172 kb on - strand, within AO356_01395at 322.172 kb on - strand, within AO356_01395at 322.172 kb on - strand, within AO356_01395at 322.175 kb on - strand, within AO356_01395at 322.175 kb on - strand, within AO356_01395at 322.478 kb on + strand, within AO356_01395at 322.479 kb on - strand, within AO356_01395at 322.479 kb on - strand, within AO356_01395at 322.479 kb on - strand, within AO356_01395at 322.626 kb on + strand, within AO356_01395at 322.627 kb on - strand, within AO356_01395at 322.627 kb on - strand, within AO356_01395at 322.684 kb on + strand, within AO356_01395at 322.684 kb on + strand, within AO356_01395at 322.685 kb on - strand, within AO356_01395at 322.685 kb on - strand, within AO356_01395at 322.685 kb on - strand, within AO356_01395at 322.685 kb on - strand, within AO356_01395at 322.685 kb on - strand, within AO356_01395at 322.798 kb on + strand, within AO356_01395at 322.798 kb on + strand, within AO356_01395at 322.799 kb on - strand, within AO356_01395at 322.799 kb on - strand, within AO356_01395at 322.799 kb on - strand, within AO356_01395at 322.931 kb on - strandat 322.993 kb on + strandat 323.070 kb on - strandat 323.070 kb on - strandat 323.070 kb on - strandat 323.312 kb on + strandat 323.312 kb on + strandat 323.313 kb on - strandat 323.313 kb on - strandat 323.313 kb on - strandat 323.333 kb on + strandat 323.334 kb on - strandat 323.334 kb on - strandat 323.425 kb on + strand, within AO356_01400at 323.425 kb on + strand, within AO356_01400at 323.425 kb on + strand, within AO356_01400at 323.425 kb on + strand, within AO356_01400at 323.441 kb on - strand, within AO356_01400at 323.505 kb on + strand, within AO356_01400at 323.506 kb on - strand, within AO356_01400at 323.506 kb on - strand, within AO356_01400at 323.509 kb on + strand, within AO356_01400at 323.509 kb on + strand, within AO356_01400at 323.510 kb on - strand, within AO356_01400at 323.518 kb on + strand, within AO356_01400at 323.518 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.524 kb on + strand, within AO356_01400at 323.525 kb on - strand, within AO356_01400at 323.525 kb on - strand, within AO356_01400at 323.525 kb on - strand, within AO356_01400at 323.525 kb on - strand, within AO356_01400at 323.525 kb on - strand, within AO356_01400at 323.555 kb on - strand, within AO356_01400at 323.560 kb on + strand, within AO356_01400at 323.560 kb on + strand, within AO356_01400at 323.560 kb on + strand, within AO356_01400at 323.561 kb on - strand, within AO356_01400at 323.668 kb on + strand, within AO356_01400at 323.669 kb on - strand, within AO356_01400at 323.713 kb on + strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.714 kb on - strand, within AO356_01400at 323.734 kb on + strand, within AO356_01400at 323.734 kb on + strand, within AO356_01400at 323.735 kb on - strand, within AO356_01400at 323.735 kb on - strand, within AO356_01400at 323.735 kb on - strand, within AO356_01400at 323.776 kb on + strand, within AO356_01400at 323.837 kb on - strand, within AO356_01400at 323.878 kb on + strand, within AO356_01400at 323.879 kb on - strand, within AO356_01400at 323.911 kb on + strand, within AO356_01400at 323.911 kb on + strand, within AO356_01400at 323.911 kb on + strand, within AO356_01400at 323.911 kb on + strand, within AO356_01400at 323.912 kb on - strand, within AO356_01400at 323.912 kb on - strand, within AO356_01400at 323.956 kb on + strand, within AO356_01400at 323.956 kb on + strand, within AO356_01400at 323.956 kb on + strand, within AO356_01400at 323.957 kb on - strand, within AO356_01400at 323.957 kb on - strand, within AO356_01400

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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320,933 + AO356_01390 0.10 +1.0
320,934 - AO356_01390 0.10 +0.5
320,936 + AO356_01390 0.10 +0.4
321,124 + AO356_01390 0.27 +0.0
321,124 + AO356_01390 0.27 -0.3
321,124 + AO356_01390 0.27 -0.8
321,125 - AO356_01390 0.28 +1.1
321,125 - AO356_01390 0.28 +0.4
321,125 - AO356_01390 0.28 +1.2
321,158 + AO356_01390 0.31 +0.6
321,158 + AO356_01390 0.31 -0.2
321,158 + AO356_01390 0.31 +1.1
321,158 + AO356_01390 0.31 -1.5
321,159 - AO356_01390 0.31 +0.4
321,159 - AO356_01390 0.31 -0.3
321,159 - AO356_01390 0.31 +0.7
321,413 + AO356_01390 0.54 -1.3
321,575 + AO356_01390 0.68 -0.1
321,644 + AO356_01390 0.75 +0.1
321,644 + AO356_01390 0.75 +1.6
321,644 + AO356_01390 0.75 +0.8
321,645 - AO356_01390 0.75 +0.2
321,767 + AO356_01390 0.86 +0.3
321,767 + AO356_01390 0.86 -0.2
322,121 - AO356_01395 0.19 +0.8
322,121 - AO356_01395 0.19 +0.2
322,121 - AO356_01395 0.19 +0.1
322,121 - AO356_01395 0.19 +0.5
322,121 - AO356_01395 0.19 -0.7
322,129 + AO356_01395 0.20 -2.2
322,130 - AO356_01395 0.20 -0.0
322,130 - AO356_01395 0.20 +0.2
322,171 + AO356_01395 0.24 +0.8
322,171 + AO356_01395 0.24 +0.3
322,171 + AO356_01395 0.24 -1.9
322,171 + AO356_01395 0.24 -0.9
322,172 - AO356_01395 0.24 -0.4
322,172 - AO356_01395 0.24 +0.0
322,172 - AO356_01395 0.24 -2.6
322,172 - AO356_01395 0.24 -1.1
322,175 - AO356_01395 0.24 -1.5
322,175 - AO356_01395 0.24 -0.5
322,478 + AO356_01395 0.54 +1.1
322,479 - AO356_01395 0.54 -0.1
322,479 - AO356_01395 0.54 +1.8
322,479 - AO356_01395 0.54 +0.3
322,626 + AO356_01395 0.68 -0.6
322,627 - AO356_01395 0.68 -0.0
322,627 - AO356_01395 0.68 -0.8
322,684 + AO356_01395 0.73 -0.2
322,684 + AO356_01395 0.73 -1.7
322,685 - AO356_01395 0.74 -0.4
322,685 - AO356_01395 0.74 -1.2
322,685 - AO356_01395 0.74 -0.4
322,685 - AO356_01395 0.74 -0.5
322,685 - AO356_01395 0.74 -0.3
322,798 + AO356_01395 0.84 -0.1
322,798 + AO356_01395 0.84 +0.0
322,799 - AO356_01395 0.85 -0.4
322,799 - AO356_01395 0.85 -0.3
322,799 - AO356_01395 0.85 +0.6
322,931 - +0.7
322,993 + -0.4
323,070 - +1.3
323,070 - -0.0
323,070 - +1.4
323,312 + -0.7
323,312 + +0.7
323,313 - +0.7
323,313 - -0.3
323,313 - -0.4
323,333 + +1.1
323,334 - +0.8
323,334 - +0.8
323,425 + AO356_01400 0.18 +1.2
323,425 + AO356_01400 0.18 -1.3
323,425 + AO356_01400 0.18 -0.3
323,425 + AO356_01400 0.18 -0.6
323,441 - AO356_01400 0.19 +0.2
323,505 + AO356_01400 0.26 -0.1
323,506 - AO356_01400 0.26 -0.9
323,506 - AO356_01400 0.26 +0.4
323,509 + AO356_01400 0.26 -0.5
323,509 + AO356_01400 0.26 +0.5
323,510 - AO356_01400 0.27 -1.5
323,518 + AO356_01400 0.27 +0.7
323,518 + AO356_01400 0.27 -1.3
323,524 + AO356_01400 0.28 +0.2
323,524 + AO356_01400 0.28 +0.3
323,524 + AO356_01400 0.28 -0.7
323,524 + AO356_01400 0.28 -0.1
323,524 + AO356_01400 0.28 -1.0
323,524 + AO356_01400 0.28 +0.8
323,524 + AO356_01400 0.28 +0.8
323,525 - AO356_01400 0.28 +1.0
323,525 - AO356_01400 0.28 -0.1
323,525 - AO356_01400 0.28 -0.2
323,525 - AO356_01400 0.28 -0.1
323,525 - AO356_01400 0.28 -0.0
323,555 - AO356_01400 0.31 +0.6
323,560 + AO356_01400 0.32 +0.1
323,560 + AO356_01400 0.32 -1.0
323,560 + AO356_01400 0.32 -1.2
323,561 - AO356_01400 0.32 +0.1
323,668 + AO356_01400 0.43 +0.0
323,669 - AO356_01400 0.43 +0.2
323,713 + AO356_01400 0.48 +0.2
323,714 - AO356_01400 0.48 +0.7
323,714 - AO356_01400 0.48 +0.1
323,714 - AO356_01400 0.48 +0.2
323,714 - AO356_01400 0.48 +0.2
323,714 - AO356_01400 0.48 +1.2
323,714 - AO356_01400 0.48 -1.2
323,734 + AO356_01400 0.50 -0.5
323,734 + AO356_01400 0.50 +1.5
323,735 - AO356_01400 0.50 +0.1
323,735 - AO356_01400 0.50 -0.3
323,735 - AO356_01400 0.50 +0.0
323,776 + AO356_01400 0.55 -0.0
323,837 - AO356_01400 0.61 +2.1
323,878 + AO356_01400 0.65 +0.0
323,879 - AO356_01400 0.65 +0.2
323,911 + AO356_01400 0.69 +1.1
323,911 + AO356_01400 0.69 +0.2
323,911 + AO356_01400 0.69 -0.5
323,911 + AO356_01400 0.69 +0.0
323,912 - AO356_01400 0.69 +0.6
323,912 - AO356_01400 0.69 +0.2
323,956 + AO356_01400 0.74 +0.9
323,956 + AO356_01400 0.74 +0.3
323,956 + AO356_01400 0.74 +0.0
323,957 - AO356_01400 0.74 +0.2
323,957 - AO356_01400 0.74 -0.3

Or see this region's nucleotide sequence