Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01295

Experiment: Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01290 and AO356_01295 are separated by 228 nucleotidesAO356_01295 and AO356_01300 are separated by 187 nucleotides AO356_01290: AO356_01290 - peroxidase, at 299,802 to 300,680 _01290 AO356_01295: AO356_01295 - class C beta-lactamase, at 300,909 to 302,057 _01295 AO356_01300: AO356_01300 - tyrosyl-trna synthetase, at 302,245 to 302,793 _01300 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 300.671 kb on - strandat 300.671 kb on - strandat 300.673 kb on + strandat 300.673 kb on + strandat 300.673 kb on + strandat 300.674 kb on - strandat 300.674 kb on - strandat 300.674 kb on - strandat 300.693 kb on - strandat 300.693 kb on - strandat 300.693 kb on - strandat 300.793 kb on + strandat 300.794 kb on - strandat 300.834 kb on - strandat 300.967 kb on + strandat 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.083 kb on + strand, within AO356_01295at 301.084 kb on - strand, within AO356_01295at 301.093 kb on - strand, within AO356_01295at 301.191 kb on + strand, within AO356_01295at 301.299 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.366 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.413 kb on + strand, within AO356_01295at 301.414 kb on - strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.734 kb on - strand, within AO356_01295at 301.743 kb on + strand, within AO356_01295at 301.743 kb on + strand, within AO356_01295at 301.744 kb on - strand, within AO356_01295at 301.744 kb on - strand, within AO356_01295at 301.785 kb on + strand, within AO356_01295at 301.785 kb on + strand, within AO356_01295at 301.786 kb on - strand, within AO356_01295at 301.938 kb on + strand, within AO356_01295at 301.939 kb on - strand, within AO356_01295at 301.995 kb on + strandat 301.995 kb on + strandat 301.996 kb on - strandat 301.996 kb on - strandat 301.996 kb on - strandat 302.055 kb on + strandat 302.055 kb on + strandat 302.073 kb on + strandat 302.074 kb on - strandat 302.217 kb on + strandat 302.562 kb on + strand, within AO356_01300at 302.576 kb on + strand, within AO356_01300at 302.576 kb on + strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.664 kb on + strand, within AO356_01300at 302.766 kb on + strandat 302.810 kb on + strandat 302.811 kb on - strandat 302.811 kb on - strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.821 kb on + strandat 302.822 kb on - strandat 302.865 kb on + strandat 302.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.08 mM
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300,671 - +0.5
300,671 - +0.1
300,673 + +0.3
300,673 + +0.5
300,673 + +1.0
300,674 - +0.5
300,674 - -0.1
300,674 - +1.0
300,693 - -1.2
300,693 - -0.6
300,693 - +0.8
300,793 + +1.1
300,794 - -0.3
300,834 - -0.4
300,967 + -0.1
301,065 + AO356_01295 0.14 +0.4
301,065 + AO356_01295 0.14 -1.7
301,065 + AO356_01295 0.14 +0.0
301,065 + AO356_01295 0.14 -0.7
301,066 - AO356_01295 0.14 +0.2
301,066 - AO356_01295 0.14 +0.7
301,066 - AO356_01295 0.14 +0.0
301,066 - AO356_01295 0.14 -3.0
301,066 - AO356_01295 0.14 +0.7
301,066 - AO356_01295 0.14 -0.2
301,066 - AO356_01295 0.14 -0.2
301,066 - AO356_01295 0.14 -0.3
301,083 + AO356_01295 0.15 +0.7
301,084 - AO356_01295 0.15 -0.4
301,093 - AO356_01295 0.16 -1.0
301,191 + AO356_01295 0.25 -0.4
301,299 + AO356_01295 0.34 +0.6
301,365 + AO356_01295 0.40 +0.5
301,365 + AO356_01295 0.40 +1.3
301,366 - AO356_01295 0.40 -0.4
301,369 - AO356_01295 0.40 +0.7
301,369 - AO356_01295 0.40 -1.0
301,369 - AO356_01295 0.40 +0.1
301,369 - AO356_01295 0.40 -1.0
301,369 - AO356_01295 0.40 -0.8
301,413 + AO356_01295 0.44 +0.3
301,414 - AO356_01295 0.44 -0.2
301,527 + AO356_01295 0.54 -0.1
301,527 + AO356_01295 0.54 +0.9
301,527 + AO356_01295 0.54 -2.2
301,527 + AO356_01295 0.54 +0.7
301,527 + AO356_01295 0.54 +0.2
301,527 + AO356_01295 0.54 -0.6
301,527 + AO356_01295 0.54 +0.5
301,527 + AO356_01295 0.54 -1.8
301,527 + AO356_01295 0.54 +0.9
301,527 + AO356_01295 0.54 +0.7
301,527 + AO356_01295 0.54 +0.0
301,527 + AO356_01295 0.54 +0.5
301,528 - AO356_01295 0.54 -0.5
301,528 - AO356_01295 0.54 -0.1
301,528 - AO356_01295 0.54 +0.2
301,528 - AO356_01295 0.54 +1.6
301,528 - AO356_01295 0.54 +0.3
301,528 - AO356_01295 0.54 -0.3
301,528 - AO356_01295 0.54 -0.1
301,528 - AO356_01295 0.54 +0.2
301,528 - AO356_01295 0.54 -0.3
301,528 - AO356_01295 0.54 -0.6
301,734 - AO356_01295 0.72 -0.5
301,743 + AO356_01295 0.73 +0.0
301,743 + AO356_01295 0.73 -1.0
301,744 - AO356_01295 0.73 +0.1
301,744 - AO356_01295 0.73 +0.8
301,785 + AO356_01295 0.76 -0.4
301,785 + AO356_01295 0.76 -0.3
301,786 - AO356_01295 0.76 +0.6
301,938 + AO356_01295 0.90 +0.1
301,939 - AO356_01295 0.90 +0.4
301,995 + -0.5
301,995 + -0.5
301,996 - +0.1
301,996 - -1.3
301,996 - +0.3
302,055 + +0.1
302,055 + -0.2
302,073 + +1.8
302,074 - +0.7
302,217 + +0.6
302,562 + AO356_01300 0.58 +0.7
302,576 + AO356_01300 0.60 -0.4
302,576 + AO356_01300 0.60 +1.5
302,577 - AO356_01300 0.60 +0.1
302,577 - AO356_01300 0.60 +0.3
302,577 - AO356_01300 0.60 +0.6
302,664 + AO356_01300 0.76 -0.4
302,766 + -1.0
302,810 + +0.2
302,811 - +0.9
302,811 - -0.5
302,814 + +0.5
302,814 + +0.3
302,814 + -0.1
302,814 + +1.5
302,815 - -0.5
302,815 - -0.4
302,815 - -0.7
302,815 - +0.1
302,815 - +1.9
302,815 - +0.4
302,821 + -0.9
302,822 - -1.2
302,865 + +1.4
302,891 - +0.7

Or see this region's nucleotide sequence