Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22030

Experiment: root EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS22025 and ABZR87_RS22030 are separated by 346 nucleotidesABZR87_RS22030 and ABZR87_RS22035 are separated by 122 nucleotidesABZR87_RS22035 and ABZR87_RS22040 are separated by 181 nucleotides ABZR87_RS22025: ABZR87_RS22025 - hypothetical protein, at 1,311,536 to 1,312,372 _RS22025 ABZR87_RS22030: ABZR87_RS22030 - hypothetical protein, at 1,312,719 to 1,313,162 _RS22030 ABZR87_RS22035: ABZR87_RS22035 - hypothetical protein, at 1,313,285 to 1,313,581 _RS22035 ABZR87_RS22040: ABZR87_RS22040 - S24 family peptidase, at 1,313,763 to 1,314,548 _RS22040 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.903 kb on + strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1311.904 kb on - strand, within ABZR87_RS22025at 1312.000 kb on + strand, within ABZR87_RS22025at 1312.001 kb on - strand, within ABZR87_RS22025at 1312.020 kb on + strand, within ABZR87_RS22025at 1312.021 kb on - strand, within ABZR87_RS22025at 1312.026 kb on + strand, within ABZR87_RS22025at 1312.026 kb on + strand, within ABZR87_RS22025at 1312.026 kb on + strand, within ABZR87_RS22025at 1312.027 kb on - strand, within ABZR87_RS22025at 1312.027 kb on - strand, within ABZR87_RS22025at 1312.027 kb on - strand, within ABZR87_RS22025at 1312.027 kb on - strand, within ABZR87_RS22025at 1312.075 kb on + strand, within ABZR87_RS22025at 1312.263 kb on + strand, within ABZR87_RS22025at 1312.264 kb on - strand, within ABZR87_RS22025at 1312.372 kb on + strandat 1312.373 kb on - strandat 1312.429 kb on - strandat 1312.486 kb on + strandat 1312.486 kb on + strandat 1312.486 kb on + strandat 1312.486 kb on + strandat 1312.486 kb on + strandat 1312.487 kb on - strandat 1312.487 kb on - strandat 1312.487 kb on - strandat 1312.487 kb on - strandat 1312.487 kb on - strandat 1312.487 kb on - strandat 1312.499 kb on + strandat 1312.500 kb on - strandat 1312.663 kb on + strandat 1312.675 kb on - strandat 1312.676 kb on + strandat 1312.676 kb on + strandat 1312.677 kb on - strandat 1312.677 kb on - strandat 1312.885 kb on + strand, within ABZR87_RS22030at 1312.885 kb on + strand, within ABZR87_RS22030at 1312.886 kb on - strand, within ABZR87_RS22030at 1312.886 kb on - strand, within ABZR87_RS22030at 1312.936 kb on + strand, within ABZR87_RS22030at 1312.937 kb on - strand, within ABZR87_RS22030at 1312.937 kb on - strand, within ABZR87_RS22030at 1312.942 kb on + strand, within ABZR87_RS22030at 1312.942 kb on + strand, within ABZR87_RS22030at 1312.943 kb on - strand, within ABZR87_RS22030at 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.177 kb on + strandat 1313.178 kb on - strandat 1313.286 kb on + strandat 1313.286 kb on + strandat 1313.287 kb on - strandat 1313.493 kb on + strand, within ABZR87_RS22035at 1313.493 kb on + strand, within ABZR87_RS22035at 1313.494 kb on - strand, within ABZR87_RS22035at 1313.494 kb on - strand, within ABZR87_RS22035at 1313.542 kb on + strand, within ABZR87_RS22035at 1313.542 kb on + strand, within ABZR87_RS22035at 1313.543 kb on - strand, within ABZR87_RS22035at 1313.654 kb on + strandat 1313.654 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
remove
1,311,903 + ABZR87_RS22025 0.44 -2.7
1,311,903 + ABZR87_RS22025 0.44 -0.2
1,311,903 + ABZR87_RS22025 0.44 -0.6
1,311,903 + ABZR87_RS22025 0.44 -0.2
1,311,903 + ABZR87_RS22025 0.44 -0.6
1,311,903 + ABZR87_RS22025 0.44 +0.7
1,311,904 - ABZR87_RS22025 0.44 -0.0
1,311,904 - ABZR87_RS22025 0.44 -0.9
1,311,904 - ABZR87_RS22025 0.44 +2.3
1,311,904 - ABZR87_RS22025 0.44 -3.5
1,311,904 - ABZR87_RS22025 0.44 -0.9
1,311,904 - ABZR87_RS22025 0.44 +0.9
1,311,904 - ABZR87_RS22025 0.44 +0.4
1,312,000 + ABZR87_RS22025 0.55 -0.8
1,312,001 - ABZR87_RS22025 0.56 -0.4
1,312,020 + ABZR87_RS22025 0.58 -0.1
1,312,021 - ABZR87_RS22025 0.58 +1.1
1,312,026 + ABZR87_RS22025 0.59 -0.3
1,312,026 + ABZR87_RS22025 0.59 -0.6
1,312,026 + ABZR87_RS22025 0.59 +0.9
1,312,027 - ABZR87_RS22025 0.59 +0.6
1,312,027 - ABZR87_RS22025 0.59 -0.9
1,312,027 - ABZR87_RS22025 0.59 +0.4
1,312,027 - ABZR87_RS22025 0.59 -0.7
1,312,075 + ABZR87_RS22025 0.64 +0.7
1,312,263 + ABZR87_RS22025 0.87 -1.2
1,312,264 - ABZR87_RS22025 0.87 -0.3
1,312,372 + +0.1
1,312,373 - -0.8
1,312,429 - -0.3
1,312,486 + -0.6
1,312,486 + -1.3
1,312,486 + +0.4
1,312,486 + -1.1
1,312,486 + +0.5
1,312,487 - +0.0
1,312,487 - -1.1
1,312,487 - +0.2
1,312,487 - +0.6
1,312,487 - -0.6
1,312,487 - -0.7
1,312,499 + -0.8
1,312,500 - +1.7
1,312,663 + +0.1
1,312,675 - -0.8
1,312,676 + -2.7
1,312,676 + -0.5
1,312,677 - +0.2
1,312,677 - -0.1
1,312,885 + ABZR87_RS22030 0.37 +1.7
1,312,885 + ABZR87_RS22030 0.37 +0.2
1,312,886 - ABZR87_RS22030 0.38 -0.5
1,312,886 - ABZR87_RS22030 0.38 +0.4
1,312,936 + ABZR87_RS22030 0.49 -0.3
1,312,937 - ABZR87_RS22030 0.49 -2.5
1,312,937 - ABZR87_RS22030 0.49 -0.1
1,312,942 + ABZR87_RS22030 0.50 -0.7
1,312,942 + ABZR87_RS22030 0.50 -1.6
1,312,943 - ABZR87_RS22030 0.50 -0.5
1,313,177 + -0.3
1,313,177 + +0.5
1,313,177 + -0.1
1,313,177 + -0.4
1,313,178 - -1.6
1,313,286 + +0.9
1,313,286 + -1.1
1,313,287 - -2.0
1,313,493 + ABZR87_RS22035 0.70 -0.9
1,313,493 + ABZR87_RS22035 0.70 +0.3
1,313,494 - ABZR87_RS22035 0.70 -1.1
1,313,494 - ABZR87_RS22035 0.70 -2.8
1,313,542 + ABZR87_RS22035 0.87 -0.4
1,313,542 + ABZR87_RS22035 0.87 -0.5
1,313,543 - ABZR87_RS22035 0.87 -1.6
1,313,654 + -1.4
1,313,654 + +0.7

Or see this region's nucleotide sequence