Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21045 and ABZR87_RS21050 are separated by 29 nucleotides ABZR87_RS21050 and ABZR87_RS21055 are separated by 2 nucleotides ABZR87_RS21055 and ABZR87_RS21060 overlap by 4 nucleotides ABZR87_RS21060 and ABZR87_RS21065 overlap by 4 nucleotides
ABZR87_RS21045: ABZR87_RS21045 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,105,081 to 1,106,181
_RS21045
ABZR87_RS21050: ABZR87_RS21050 - DUF1295 domain-containing protein, at 1,106,211 to 1,106,987
_RS21050
ABZR87_RS21055: ABZR87_RS21055 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,106,990 to 1,108,189
_RS21055
ABZR87_RS21060: ABZR87_RS21060 - DUF1365 domain-containing protein, at 1,108,186 to 1,108,953
_RS21060
ABZR87_RS21065: ABZR87_RS21065 - FAD-dependent oxidoreductase, at 1,108,950 to 1,110,245
_RS21065
Position (kb)
1106
1107
1108
1109 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1106.200 kb on + strand at 1106.201 kb on - strand at 1106.201 kb on - strand at 1106.201 kb on - strand at 1106.209 kb on + strand at 1106.238 kb on + strand at 1106.238 kb on + strand at 1106.239 kb on - strand at 1106.257 kb on + strand at 1106.257 kb on + strand at 1106.257 kb on + strand at 1106.266 kb on + strand at 1106.267 kb on - strand at 1106.267 kb on - strand at 1106.288 kb on + strand at 1106.288 kb on + strand at 1106.398 kb on + strand, within ABZR87_RS21050 at 1106.398 kb on + strand, within ABZR87_RS21050 at 1106.399 kb on - strand, within ABZR87_RS21050 at 1106.399 kb on - strand, within ABZR87_RS21050 at 1106.428 kb on + strand, within ABZR87_RS21050 at 1107.200 kb on + strand, within ABZR87_RS21055 at 1107.200 kb on + strand, within ABZR87_RS21055 at 1107.200 kb on + strand, within ABZR87_RS21055 at 1107.201 kb on - strand, within ABZR87_RS21055 at 1107.306 kb on - strand, within ABZR87_RS21055 at 1107.385 kb on - strand, within ABZR87_RS21055 at 1107.518 kb on - strand, within ABZR87_RS21055 at 1107.757 kb on - strand, within ABZR87_RS21055 at 1107.759 kb on - strand, within ABZR87_RS21055 at 1107.777 kb on + strand, within ABZR87_RS21055 at 1107.777 kb on + strand, within ABZR87_RS21055 at 1107.778 kb on - strand, within ABZR87_RS21055 at 1107.958 kb on - strand, within ABZR87_RS21055 at 1108.125 kb on - strand at 1108.404 kb on - strand, within ABZR87_RS21060 at 1108.414 kb on + strand, within ABZR87_RS21060 at 1108.414 kb on + strand, within ABZR87_RS21060 at 1108.556 kb on + strand, within ABZR87_RS21060 at 1108.632 kb on - strand, within ABZR87_RS21060 at 1108.735 kb on + strand, within ABZR87_RS21060 at 1108.736 kb on - strand, within ABZR87_RS21060 at 1108.736 kb on - strand, within ABZR87_RS21060 at 1108.772 kb on + strand, within ABZR87_RS21060 at 1109.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 1,106,200 + -1.4 1,106,201 - -0.5 1,106,201 - -0.5 1,106,201 - +0.4 1,106,209 + -0.7 1,106,238 + -1.3 1,106,238 + -0.4 1,106,239 - -3.7 1,106,257 + -2.0 1,106,257 + -0.8 1,106,257 + -2.0 1,106,266 + -1.5 1,106,267 - -2.1 1,106,267 - -2.9 1,106,288 + -2.5 1,106,288 + -2.7 1,106,398 + ABZR87_RS21050 0.24 -2.7 1,106,398 + ABZR87_RS21050 0.24 -0.4 1,106,399 - ABZR87_RS21050 0.24 -3.4 1,106,399 - ABZR87_RS21050 0.24 -3.1 1,106,428 + ABZR87_RS21050 0.28 -0.8 1,107,200 + ABZR87_RS21055 0.17 -2.2 1,107,200 + ABZR87_RS21055 0.17 -2.7 1,107,200 + ABZR87_RS21055 0.17 -1.8 1,107,201 - ABZR87_RS21055 0.18 -2.0 1,107,306 - ABZR87_RS21055 0.26 -4.0 1,107,385 - ABZR87_RS21055 0.33 -2.7 1,107,518 - ABZR87_RS21055 0.44 -3.7 1,107,757 - ABZR87_RS21055 0.64 -3.0 1,107,759 - ABZR87_RS21055 0.64 -0.5 1,107,777 + ABZR87_RS21055 0.66 -1.3 1,107,777 + ABZR87_RS21055 0.66 -2.0 1,107,778 - ABZR87_RS21055 0.66 -2.1 1,107,958 - ABZR87_RS21055 0.81 -1.4 1,108,125 - -3.9 1,108,404 - ABZR87_RS21060 0.28 -2.1 1,108,414 + ABZR87_RS21060 0.30 +0.1 1,108,414 + ABZR87_RS21060 0.30 -3.0 1,108,556 + ABZR87_RS21060 0.48 -2.7 1,108,632 - ABZR87_RS21060 0.58 -2.3 1,108,735 + ABZR87_RS21060 0.71 -0.7 1,108,736 - ABZR87_RS21060 0.72 -1.2 1,108,736 - ABZR87_RS21060 0.72 -3.5 1,108,772 + ABZR87_RS21060 0.76 -2.1 1,109,039 - -2.3
Or see this region's nucleotide sequence