Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21025 and ABZR87_RS21030 are separated by 339 nucleotides ABZR87_RS21030 and ABZR87_RS21035 are separated by 11 nucleotides ABZR87_RS21035 and ABZR87_RS21040 overlap by 12 nucleotides ABZR87_RS21040 and ABZR87_RS21045 are separated by 15 nucleotides
ABZR87_RS21025: ABZR87_RS21025 - lipocalin family protein, at 1,102,472 to 1,103,083
_RS21025
ABZR87_RS21030: ABZR87_RS21030 - chalcone isomerase family protein, at 1,103,423 to 1,103,902
_RS21030
ABZR87_RS21035: ABZR87_RS21035 - lipocalin family protein, at 1,103,914 to 1,104,546
_RS21035
ABZR87_RS21040: ABZR87_RS21040 - DUF2878 domain-containing protein, at 1,104,535 to 1,105,065
_RS21040
ABZR87_RS21045: ABZR87_RS21045 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,105,081 to 1,106,181
_RS21045
Position (kb)
1103
1104
1105 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1102.924 kb on + strand, within ABZR87_RS21025 at 1102.925 kb on - strand, within ABZR87_RS21025 at 1103.096 kb on + strand at 1103.096 kb on + strand at 1103.096 kb on + strand at 1103.096 kb on + strand at 1103.214 kb on + strand at 1103.215 kb on - strand at 1103.245 kb on + strand at 1103.314 kb on - strand at 1103.314 kb on - strand at 1103.365 kb on + strand at 1103.365 kb on + strand at 1103.365 kb on + strand at 1103.366 kb on - strand at 1103.517 kb on - strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.555 kb on + strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.556 kb on - strand, within ABZR87_RS21030 at 1103.585 kb on + strand, within ABZR87_RS21030 at 1103.585 kb on + strand, within ABZR87_RS21030 at 1103.586 kb on - strand, within ABZR87_RS21030 at 1103.627 kb on - strand, within ABZR87_RS21030 at 1103.747 kb on + strand, within ABZR87_RS21030 at 1103.747 kb on + strand, within ABZR87_RS21030 at 1103.915 kb on + strand at 1103.915 kb on + strand at 1103.915 kb on + strand at 1103.916 kb on - strand at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.131 kb on + strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.132 kb on - strand, within ABZR87_RS21035 at 1104.152 kb on + strand, within ABZR87_RS21035 at 1104.153 kb on - strand, within ABZR87_RS21035 at 1104.153 kb on - strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.266 kb on + strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.267 kb on - strand, within ABZR87_RS21035 at 1104.312 kb on - strand, within ABZR87_RS21035 at 1104.342 kb on - strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.362 kb on + strand, within ABZR87_RS21035 at 1104.363 kb on - strand, within ABZR87_RS21035 at 1104.363 kb on - strand, within ABZR87_RS21035 at 1104.377 kb on + strand, within ABZR87_RS21035 at 1104.378 kb on - strand, within ABZR87_RS21035 at 1104.559 kb on + strand at 1104.560 kb on - strand at 1104.750 kb on - strand, within ABZR87_RS21040 at 1105.004 kb on + strand, within ABZR87_RS21040 at 1105.068 kb on - strand at 1105.101 kb on - strand at 1105.101 kb on - strand at 1105.134 kb on - strand at 1105.160 kb on + strand at 1105.160 kb on + strand at 1105.160 kb on + strand at 1105.208 kb on + strand, within ABZR87_RS21045 at 1105.286 kb on + strand, within ABZR87_RS21045 at 1105.385 kb on + strand, within ABZR87_RS21045 at 1105.386 kb on - strand, within ABZR87_RS21045 at 1105.514 kb on + strand, within ABZR87_RS21045 at 1105.514 kb on + strand, within ABZR87_RS21045 at 1105.515 kb on - strand, within ABZR87_RS21045
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 1,102,924 + ABZR87_RS21025 0.74 +0.2 1,102,925 - ABZR87_RS21025 0.74 -0.1 1,103,096 + -0.9 1,103,096 + +0.1 1,103,096 + +1.7 1,103,096 + -2.7 1,103,214 + +1.8 1,103,215 - -0.9 1,103,245 + -0.1 1,103,314 - -1.9 1,103,314 - -0.8 1,103,365 + +0.8 1,103,365 + -1.1 1,103,365 + +0.5 1,103,366 - -0.5 1,103,517 - ABZR87_RS21030 0.20 -2.8 1,103,555 + ABZR87_RS21030 0.28 +0.1 1,103,555 + ABZR87_RS21030 0.28 -0.6 1,103,555 + ABZR87_RS21030 0.28 -1.2 1,103,555 + ABZR87_RS21030 0.28 -0.6 1,103,556 - ABZR87_RS21030 0.28 -0.3 1,103,556 - ABZR87_RS21030 0.28 -0.4 1,103,556 - ABZR87_RS21030 0.28 +0.3 1,103,556 - ABZR87_RS21030 0.28 -2.2 1,103,585 + ABZR87_RS21030 0.34 -0.8 1,103,585 + ABZR87_RS21030 0.34 -2.6 1,103,586 - ABZR87_RS21030 0.34 +0.1 1,103,627 - ABZR87_RS21030 0.42 -1.5 1,103,747 + ABZR87_RS21030 0.68 +0.8 1,103,747 + ABZR87_RS21030 0.68 -0.9 1,103,915 + +0.5 1,103,915 + -0.0 1,103,915 + -0.3 1,103,916 - -1.2 1,104,131 + ABZR87_RS21035 0.34 -0.3 1,104,131 + ABZR87_RS21035 0.34 -0.8 1,104,131 + ABZR87_RS21035 0.34 -3.8 1,104,132 - ABZR87_RS21035 0.34 +0.6 1,104,132 - ABZR87_RS21035 0.34 -1.2 1,104,132 - ABZR87_RS21035 0.34 -2.5 1,104,132 - ABZR87_RS21035 0.34 -3.4 1,104,152 + ABZR87_RS21035 0.38 -2.2 1,104,153 - ABZR87_RS21035 0.38 -1.3 1,104,153 - ABZR87_RS21035 0.38 -1.1 1,104,266 + ABZR87_RS21035 0.56 -2.0 1,104,266 + ABZR87_RS21035 0.56 -1.1 1,104,266 + ABZR87_RS21035 0.56 -1.9 1,104,267 - ABZR87_RS21035 0.56 -1.2 1,104,267 - ABZR87_RS21035 0.56 -1.8 1,104,267 - ABZR87_RS21035 0.56 -2.4 1,104,267 - ABZR87_RS21035 0.56 -2.6 1,104,267 - ABZR87_RS21035 0.56 -0.8 1,104,312 - ABZR87_RS21035 0.63 -2.5 1,104,342 - ABZR87_RS21035 0.68 -3.0 1,104,362 + ABZR87_RS21035 0.71 -2.2 1,104,362 + ABZR87_RS21035 0.71 -1.2 1,104,362 + ABZR87_RS21035 0.71 -1.5 1,104,362 + ABZR87_RS21035 0.71 -3.1 1,104,362 + ABZR87_RS21035 0.71 -0.9 1,104,362 + ABZR87_RS21035 0.71 -1.0 1,104,362 + ABZR87_RS21035 0.71 -1.7 1,104,363 - ABZR87_RS21035 0.71 -2.7 1,104,363 - ABZR87_RS21035 0.71 +0.1 1,104,377 + ABZR87_RS21035 0.73 -2.1 1,104,378 - ABZR87_RS21035 0.73 -1.9 1,104,559 + -2.2 1,104,560 - -0.9 1,104,750 - ABZR87_RS21040 0.40 +0.2 1,105,004 + ABZR87_RS21040 0.88 +1.3 1,105,068 - +0.6 1,105,101 - -0.3 1,105,101 - -0.3 1,105,134 - -0.1 1,105,160 + -1.5 1,105,160 + -2.3 1,105,160 + -0.7 1,105,208 + ABZR87_RS21045 0.12 -2.3 1,105,286 + ABZR87_RS21045 0.19 -1.1 1,105,385 + ABZR87_RS21045 0.28 -1.2 1,105,386 - ABZR87_RS21045 0.28 -1.0 1,105,514 + ABZR87_RS21045 0.39 +0.2 1,105,514 + ABZR87_RS21045 0.39 -1.6 1,105,515 - ABZR87_RS21045 0.39 -1.9
Or see this region's nucleotide sequence