Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21035

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21025 and ABZR87_RS21030 are separated by 339 nucleotidesABZR87_RS21030 and ABZR87_RS21035 are separated by 11 nucleotidesABZR87_RS21035 and ABZR87_RS21040 overlap by 12 nucleotidesABZR87_RS21040 and ABZR87_RS21045 are separated by 15 nucleotides ABZR87_RS21025: ABZR87_RS21025 - lipocalin family protein, at 1,102,472 to 1,103,083 _RS21025 ABZR87_RS21030: ABZR87_RS21030 - chalcone isomerase family protein, at 1,103,423 to 1,103,902 _RS21030 ABZR87_RS21035: ABZR87_RS21035 - lipocalin family protein, at 1,103,914 to 1,104,546 _RS21035 ABZR87_RS21040: ABZR87_RS21040 - DUF2878 domain-containing protein, at 1,104,535 to 1,105,065 _RS21040 ABZR87_RS21045: ABZR87_RS21045 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,105,081 to 1,106,181 _RS21045 Position (kb) 1103 1104 1105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1102.924 kb on + strand, within ABZR87_RS21025at 1102.925 kb on - strand, within ABZR87_RS21025at 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.096 kb on + strandat 1103.214 kb on + strandat 1103.215 kb on - strandat 1103.245 kb on + strandat 1103.314 kb on - strandat 1103.314 kb on - strandat 1103.365 kb on + strandat 1103.365 kb on + strandat 1103.365 kb on + strandat 1103.366 kb on - strandat 1103.517 kb on - strand, within ABZR87_RS21030at 1103.555 kb on + strand, within ABZR87_RS21030at 1103.555 kb on + strand, within ABZR87_RS21030at 1103.555 kb on + strand, within ABZR87_RS21030at 1103.555 kb on + strand, within ABZR87_RS21030at 1103.556 kb on - strand, within ABZR87_RS21030at 1103.556 kb on - strand, within ABZR87_RS21030at 1103.556 kb on - strand, within ABZR87_RS21030at 1103.556 kb on - strand, within ABZR87_RS21030at 1103.585 kb on + strand, within ABZR87_RS21030at 1103.585 kb on + strand, within ABZR87_RS21030at 1103.586 kb on - strand, within ABZR87_RS21030at 1103.627 kb on - strand, within ABZR87_RS21030at 1103.747 kb on + strand, within ABZR87_RS21030at 1103.747 kb on + strand, within ABZR87_RS21030at 1103.915 kb on + strandat 1103.915 kb on + strandat 1103.915 kb on + strandat 1103.916 kb on - strandat 1104.131 kb on + strand, within ABZR87_RS21035at 1104.131 kb on + strand, within ABZR87_RS21035at 1104.131 kb on + strand, within ABZR87_RS21035at 1104.132 kb on - strand, within ABZR87_RS21035at 1104.132 kb on - strand, within ABZR87_RS21035at 1104.132 kb on - strand, within ABZR87_RS21035at 1104.132 kb on - strand, within ABZR87_RS21035at 1104.152 kb on + strand, within ABZR87_RS21035at 1104.153 kb on - strand, within ABZR87_RS21035at 1104.153 kb on - strand, within ABZR87_RS21035at 1104.266 kb on + strand, within ABZR87_RS21035at 1104.266 kb on + strand, within ABZR87_RS21035at 1104.266 kb on + strand, within ABZR87_RS21035at 1104.267 kb on - strand, within ABZR87_RS21035at 1104.267 kb on - strand, within ABZR87_RS21035at 1104.267 kb on - strand, within ABZR87_RS21035at 1104.267 kb on - strand, within ABZR87_RS21035at 1104.267 kb on - strand, within ABZR87_RS21035at 1104.312 kb on - strand, within ABZR87_RS21035at 1104.342 kb on - strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.362 kb on + strand, within ABZR87_RS21035at 1104.363 kb on - strand, within ABZR87_RS21035at 1104.363 kb on - strand, within ABZR87_RS21035at 1104.377 kb on + strand, within ABZR87_RS21035at 1104.378 kb on - strand, within ABZR87_RS21035at 1104.559 kb on + strandat 1104.560 kb on - strandat 1104.750 kb on - strand, within ABZR87_RS21040at 1105.004 kb on + strand, within ABZR87_RS21040at 1105.068 kb on - strandat 1105.101 kb on - strandat 1105.101 kb on - strandat 1105.134 kb on - strandat 1105.160 kb on + strandat 1105.160 kb on + strandat 1105.160 kb on + strandat 1105.208 kb on + strand, within ABZR87_RS21045at 1105.286 kb on + strand, within ABZR87_RS21045at 1105.385 kb on + strand, within ABZR87_RS21045at 1105.386 kb on - strand, within ABZR87_RS21045at 1105.514 kb on + strand, within ABZR87_RS21045at 1105.514 kb on + strand, within ABZR87_RS21045at 1105.515 kb on - strand, within ABZR87_RS21045

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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1,102,924 + ABZR87_RS21025 0.74 +0.2
1,102,925 - ABZR87_RS21025 0.74 -0.1
1,103,096 + -0.9
1,103,096 + +0.1
1,103,096 + +1.7
1,103,096 + -2.7
1,103,214 + +1.8
1,103,215 - -0.9
1,103,245 + -0.1
1,103,314 - -1.9
1,103,314 - -0.8
1,103,365 + +0.8
1,103,365 + -1.1
1,103,365 + +0.5
1,103,366 - -0.5
1,103,517 - ABZR87_RS21030 0.20 -2.8
1,103,555 + ABZR87_RS21030 0.28 +0.1
1,103,555 + ABZR87_RS21030 0.28 -0.6
1,103,555 + ABZR87_RS21030 0.28 -1.2
1,103,555 + ABZR87_RS21030 0.28 -0.6
1,103,556 - ABZR87_RS21030 0.28 -0.3
1,103,556 - ABZR87_RS21030 0.28 -0.4
1,103,556 - ABZR87_RS21030 0.28 +0.3
1,103,556 - ABZR87_RS21030 0.28 -2.2
1,103,585 + ABZR87_RS21030 0.34 -0.8
1,103,585 + ABZR87_RS21030 0.34 -2.6
1,103,586 - ABZR87_RS21030 0.34 +0.1
1,103,627 - ABZR87_RS21030 0.42 -1.5
1,103,747 + ABZR87_RS21030 0.68 +0.8
1,103,747 + ABZR87_RS21030 0.68 -0.9
1,103,915 + +0.5
1,103,915 + -0.0
1,103,915 + -0.3
1,103,916 - -1.2
1,104,131 + ABZR87_RS21035 0.34 -0.3
1,104,131 + ABZR87_RS21035 0.34 -0.8
1,104,131 + ABZR87_RS21035 0.34 -3.8
1,104,132 - ABZR87_RS21035 0.34 +0.6
1,104,132 - ABZR87_RS21035 0.34 -1.2
1,104,132 - ABZR87_RS21035 0.34 -2.5
1,104,132 - ABZR87_RS21035 0.34 -3.4
1,104,152 + ABZR87_RS21035 0.38 -2.2
1,104,153 - ABZR87_RS21035 0.38 -1.3
1,104,153 - ABZR87_RS21035 0.38 -1.1
1,104,266 + ABZR87_RS21035 0.56 -2.0
1,104,266 + ABZR87_RS21035 0.56 -1.1
1,104,266 + ABZR87_RS21035 0.56 -1.9
1,104,267 - ABZR87_RS21035 0.56 -1.2
1,104,267 - ABZR87_RS21035 0.56 -1.8
1,104,267 - ABZR87_RS21035 0.56 -2.4
1,104,267 - ABZR87_RS21035 0.56 -2.6
1,104,267 - ABZR87_RS21035 0.56 -0.8
1,104,312 - ABZR87_RS21035 0.63 -2.5
1,104,342 - ABZR87_RS21035 0.68 -3.0
1,104,362 + ABZR87_RS21035 0.71 -2.2
1,104,362 + ABZR87_RS21035 0.71 -1.2
1,104,362 + ABZR87_RS21035 0.71 -1.5
1,104,362 + ABZR87_RS21035 0.71 -3.1
1,104,362 + ABZR87_RS21035 0.71 -0.9
1,104,362 + ABZR87_RS21035 0.71 -1.0
1,104,362 + ABZR87_RS21035 0.71 -1.7
1,104,363 - ABZR87_RS21035 0.71 -2.7
1,104,363 - ABZR87_RS21035 0.71 +0.1
1,104,377 + ABZR87_RS21035 0.73 -2.1
1,104,378 - ABZR87_RS21035 0.73 -1.9
1,104,559 + -2.2
1,104,560 - -0.9
1,104,750 - ABZR87_RS21040 0.40 +0.2
1,105,004 + ABZR87_RS21040 0.88 +1.3
1,105,068 - +0.6
1,105,101 - -0.3
1,105,101 - -0.3
1,105,134 - -0.1
1,105,160 + -1.5
1,105,160 + -2.3
1,105,160 + -0.7
1,105,208 + ABZR87_RS21045 0.12 -2.3
1,105,286 + ABZR87_RS21045 0.19 -1.1
1,105,385 + ABZR87_RS21045 0.28 -1.2
1,105,386 - ABZR87_RS21045 0.28 -1.0
1,105,514 + ABZR87_RS21045 0.39 +0.2
1,105,514 + ABZR87_RS21045 0.39 -1.6
1,105,515 - ABZR87_RS21045 0.39 -1.9

Or see this region's nucleotide sequence