Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20545

Experiment: root EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS20540 and ABZR87_RS20545 are separated by 129 nucleotidesABZR87_RS20545 and ABZR87_RS20550 overlap by 4 nucleotides ABZR87_RS20540: ABZR87_RS20540 - LysR family transcriptional regulator, at 994,998 to 995,912 _RS20540 ABZR87_RS20545: ABZR87_RS20545 - aldo/keto reductase, at 996,042 to 996,875 _RS20545 ABZR87_RS20550: ABZR87_RS20550 - SLC13 family permease, at 996,872 to 998,029 _RS20550 Position (kb) 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 995.060 kb on - strandat 995.074 kb on + strandat 995.075 kb on - strandat 995.083 kb on + strandat 995.083 kb on + strandat 995.084 kb on - strandat 995.314 kb on + strand, within ABZR87_RS20540at 995.314 kb on + strand, within ABZR87_RS20540at 995.314 kb on + strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.315 kb on - strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.380 kb on + strand, within ABZR87_RS20540at 995.704 kb on + strand, within ABZR87_RS20540at 995.704 kb on + strand, within ABZR87_RS20540at 995.879 kb on + strandat 995.879 kb on + strandat 995.880 kb on - strandat 995.880 kb on - strandat 995.935 kb on + strandat 995.936 kb on - strandat 995.970 kb on + strandat 995.980 kb on - strandat 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.183 kb on + strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.184 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.337 kb on - strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.348 kb on + strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.349 kb on - strand, within ABZR87_RS20545at 996.449 kb on + strand, within ABZR87_RS20545at 996.449 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.522 kb on + strand, within ABZR87_RS20545at 996.523 kb on - strand, within ABZR87_RS20545at 996.550 kb on + strand, within ABZR87_RS20545at 996.551 kb on - strand, within ABZR87_RS20545at 996.558 kb on + strand, within ABZR87_RS20545at 996.559 kb on - strand, within ABZR87_RS20545at 996.591 kb on + strand, within ABZR87_RS20545at 996.680 kb on + strand, within ABZR87_RS20545at 996.680 kb on + strand, within ABZR87_RS20545at 996.681 kb on - strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.704 kb on + strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.705 kb on - strand, within ABZR87_RS20545at 996.829 kb on - strandat 996.829 kb on - strandat 996.829 kb on - strandat 996.829 kb on - strandat 996.874 kb on - strandat 996.897 kb on + strandat 996.897 kb on + strandat 996.897 kb on + strandat 996.898 kb on - strandat 996.898 kb on - strandat 996.898 kb on - strandat 996.920 kb on + strandat 996.936 kb on + strandat 996.937 kb on - strandat 997.069 kb on - strand, within ABZR87_RS20550at 997.069 kb on - strand, within ABZR87_RS20550at 997.134 kb on + strand, within ABZR87_RS20550at 997.134 kb on + strand, within ABZR87_RS20550at 997.134 kb on + strand, within ABZR87_RS20550at 997.134 kb on + strand, within ABZR87_RS20550at 997.135 kb on - strand, within ABZR87_RS20550at 997.135 kb on - strand, within ABZR87_RS20550at 997.135 kb on - strand, within ABZR87_RS20550at 997.269 kb on + strand, within ABZR87_RS20550at 997.269 kb on + strand, within ABZR87_RS20550at 997.270 kb on - strand, within ABZR87_RS20550at 997.270 kb on - strand, within ABZR87_RS20550at 997.270 kb on - strand, within ABZR87_RS20550at 997.270 kb on - strand, within ABZR87_RS20550at 997.287 kb on + strand, within ABZR87_RS20550at 997.287 kb on + strand, within ABZR87_RS20550at 997.288 kb on - strand, within ABZR87_RS20550at 997.288 kb on - strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.356 kb on + strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.357 kb on - strand, within ABZR87_RS20550at 997.610 kb on + strand, within ABZR87_RS20550at 997.611 kb on - strand, within ABZR87_RS20550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
remove
995,060 - -1.1
995,074 + +0.8
995,075 - +0.4
995,083 + -0.6
995,083 + -0.5
995,084 - +0.2
995,314 + ABZR87_RS20540 0.35 -0.3
995,314 + ABZR87_RS20540 0.35 +0.1
995,314 + ABZR87_RS20540 0.35 +0.8
995,315 - ABZR87_RS20540 0.35 -0.4
995,315 - ABZR87_RS20540 0.35 +0.0
995,315 - ABZR87_RS20540 0.35 -1.4
995,315 - ABZR87_RS20540 0.35 +1.0
995,315 - ABZR87_RS20540 0.35 -1.2
995,315 - ABZR87_RS20540 0.35 +0.3
995,380 + ABZR87_RS20540 0.42 -0.5
995,380 + ABZR87_RS20540 0.42 -0.1
995,380 + ABZR87_RS20540 0.42 +0.1
995,380 + ABZR87_RS20540 0.42 -1.2
995,704 + ABZR87_RS20540 0.77 +1.3
995,704 + ABZR87_RS20540 0.77 -0.0
995,879 + +0.7
995,879 + -0.2
995,880 - -0.7
995,880 - -1.1
995,935 + +2.3
995,936 - -1.8
995,970 + -1.4
995,980 - -1.7
996,183 + ABZR87_RS20545 0.17 +0.9
996,183 + ABZR87_RS20545 0.17 +0.0
996,183 + ABZR87_RS20545 0.17 -0.8
996,183 + ABZR87_RS20545 0.17 -0.8
996,184 - ABZR87_RS20545 0.17 +0.8
996,184 - ABZR87_RS20545 0.17 -0.2
996,184 - ABZR87_RS20545 0.17 +0.8
996,337 - ABZR87_RS20545 0.35 -3.1
996,337 - ABZR87_RS20545 0.35 +0.1
996,337 - ABZR87_RS20545 0.35 +0.7
996,337 - ABZR87_RS20545 0.35 -0.4
996,348 + ABZR87_RS20545 0.37 +0.2
996,348 + ABZR87_RS20545 0.37 -0.5
996,348 + ABZR87_RS20545 0.37 +0.9
996,348 + ABZR87_RS20545 0.37 +0.9
996,348 + ABZR87_RS20545 0.37 +1.0
996,349 - ABZR87_RS20545 0.37 +0.9
996,349 - ABZR87_RS20545 0.37 -0.4
996,349 - ABZR87_RS20545 0.37 -0.3
996,349 - ABZR87_RS20545 0.37 +0.2
996,349 - ABZR87_RS20545 0.37 +0.8
996,349 - ABZR87_RS20545 0.37 +0.0
996,349 - ABZR87_RS20545 0.37 -0.9
996,349 - ABZR87_RS20545 0.37 +0.2
996,449 + ABZR87_RS20545 0.49 -0.1
996,449 + ABZR87_RS20545 0.49 +1.8
996,522 + ABZR87_RS20545 0.58 +0.9
996,522 + ABZR87_RS20545 0.58 +0.9
996,522 + ABZR87_RS20545 0.58 +0.2
996,522 + ABZR87_RS20545 0.58 +0.4
996,523 - ABZR87_RS20545 0.58 +0.2
996,550 + ABZR87_RS20545 0.61 +0.2
996,551 - ABZR87_RS20545 0.61 +0.7
996,558 + ABZR87_RS20545 0.62 +2.4
996,559 - ABZR87_RS20545 0.62 +1.0
996,591 + ABZR87_RS20545 0.66 +1.2
996,680 + ABZR87_RS20545 0.76 -1.5
996,680 + ABZR87_RS20545 0.76 +0.6
996,681 - ABZR87_RS20545 0.77 +0.5
996,704 + ABZR87_RS20545 0.79 -1.5
996,704 + ABZR87_RS20545 0.79 -0.0
996,704 + ABZR87_RS20545 0.79 +1.0
996,704 + ABZR87_RS20545 0.79 -1.6
996,704 + ABZR87_RS20545 0.79 -0.7
996,704 + ABZR87_RS20545 0.79 +1.0
996,704 + ABZR87_RS20545 0.79 +0.3
996,704 + ABZR87_RS20545 0.79 -0.2
996,704 + ABZR87_RS20545 0.79 +0.5
996,705 - ABZR87_RS20545 0.79 -2.0
996,705 - ABZR87_RS20545 0.79 -0.4
996,705 - ABZR87_RS20545 0.79 -0.3
996,829 - +0.2
996,829 - +2.4
996,829 - -0.9
996,829 - +1.0
996,874 - +0.8
996,897 + +0.3
996,897 + +1.0
996,897 + +0.3
996,898 - +0.3
996,898 - +3.4
996,898 - +0.8
996,920 + +1.5
996,936 + -1.6
996,937 - -1.6
997,069 - ABZR87_RS20550 0.17 +0.7
997,069 - ABZR87_RS20550 0.17 -0.1
997,134 + ABZR87_RS20550 0.23 +0.7
997,134 + ABZR87_RS20550 0.23 +0.3
997,134 + ABZR87_RS20550 0.23 -0.3
997,134 + ABZR87_RS20550 0.23 -2.8
997,135 - ABZR87_RS20550 0.23 +0.9
997,135 - ABZR87_RS20550 0.23 +0.4
997,135 - ABZR87_RS20550 0.23 -0.3
997,269 + ABZR87_RS20550 0.34 -0.8
997,269 + ABZR87_RS20550 0.34 -0.6
997,270 - ABZR87_RS20550 0.34 +0.4
997,270 - ABZR87_RS20550 0.34 +0.7
997,270 - ABZR87_RS20550 0.34 -0.1
997,270 - ABZR87_RS20550 0.34 -0.0
997,287 + ABZR87_RS20550 0.36 -0.4
997,287 + ABZR87_RS20550 0.36 -0.8
997,288 - ABZR87_RS20550 0.36 -1.4
997,288 - ABZR87_RS20550 0.36 +0.4
997,356 + ABZR87_RS20550 0.42 +1.0
997,356 + ABZR87_RS20550 0.42 +1.2
997,356 + ABZR87_RS20550 0.42 +1.7
997,356 + ABZR87_RS20550 0.42 +0.5
997,356 + ABZR87_RS20550 0.42 -0.8
997,356 + ABZR87_RS20550 0.42 +0.5
997,357 - ABZR87_RS20550 0.42 -0.1
997,357 - ABZR87_RS20550 0.42 +0.2
997,357 - ABZR87_RS20550 0.42 -0.8
997,357 - ABZR87_RS20550 0.42 -0.1
997,357 - ABZR87_RS20550 0.42 +0.8
997,357 - ABZR87_RS20550 0.42 -1.1
997,357 - ABZR87_RS20550 0.42 -1.1
997,357 - ABZR87_RS20550 0.42 -1.0
997,357 - ABZR87_RS20550 0.42 +0.1
997,610 + ABZR87_RS20550 0.64 -0.8
997,611 - ABZR87_RS20550 0.64 +0.3

Or see this region's nucleotide sequence