Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20445 and ABZR87_RS20450 are separated by 45 nucleotides ABZR87_RS20450 and ABZR87_RS20455 are separated by 59 nucleotides ABZR87_RS20455 and ABZR87_RS20460 are separated by 3 nucleotides
ABZR87_RS20445: ABZR87_RS20445 - LysR substrate-binding domain-containing protein, at 974,725 to 975,660
_RS20445
ABZR87_RS20450: ABZR87_RS20450 - HAD family phosphatase, at 975,706 to 976,389
_RS20450
ABZR87_RS20455: ABZR87_RS20455 - TIGR03364 family FAD-dependent oxidoreductase, at 976,449 to 977,669
_RS20455
ABZR87_RS20460: ABZR87_RS20460 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 977,673 to 978,698
_RS20460
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1
2 at 975.511 kb on + strand, within ABZR87_RS20445 at 975.517 kb on + strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.518 kb on - strand, within ABZR87_RS20445 at 975.630 kb on + strand at 975.659 kb on - strand at 975.705 kb on + strand at 975.706 kb on - strand at 975.706 kb on - strand at 975.706 kb on - strand at 976.054 kb on + strand, within ABZR87_RS20450 at 976.259 kb on - strand, within ABZR87_RS20450 at 976.526 kb on + strand at 976.527 kb on - strand at 976.527 kb on - strand at 976.527 kb on - strand at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.912 kb on + strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 976.913 kb on - strand, within ABZR87_RS20455 at 977.044 kb on + strand, within ABZR87_RS20455 at 977.204 kb on - strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.263 kb on + strand, within ABZR87_RS20455 at 977.264 kb on - strand, within ABZR87_RS20455 at 977.432 kb on - strand, within ABZR87_RS20455 at 977.674 kb on + strand at 977.675 kb on - strand at 977.675 kb on - strand at 977.698 kb on + strand at 977.699 kb on - strand at 977.699 kb on - strand at 977.699 kb on - strand at 977.848 kb on + strand, within ABZR87_RS20460 at 977.848 kb on + strand, within ABZR87_RS20460 at 977.916 kb on - strand, within ABZR87_RS20460 at 977.976 kb on - strand, within ABZR87_RS20460 at 978.089 kb on - strand, within ABZR87_RS20460 at 978.089 kb on - strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.121 kb on + strand, within ABZR87_RS20460 at 978.175 kb on + strand, within ABZR87_RS20460 at 978.358 kb on + strand, within ABZR87_RS20460 at 978.358 kb on + strand, within ABZR87_RS20460 at 978.571 kb on + strand, within ABZR87_RS20460 at 978.572 kb on - strand, within ABZR87_RS20460 at 978.572 kb on - strand, within ABZR87_RS20460 at 978.605 kb on - strand at 978.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 975,511 + ABZR87_RS20445 0.84 -0.8 975,517 + ABZR87_RS20445 0.85 -0.9 975,518 - ABZR87_RS20445 0.85 +1.0 975,518 - ABZR87_RS20445 0.85 +1.4 975,630 + -0.3 975,659 - +0.5 975,705 + +0.8 975,706 - -0.8 975,706 - +0.4 975,706 - +0.1 976,054 + ABZR87_RS20450 0.51 -0.0 976,259 - ABZR87_RS20450 0.81 +2.0 976,526 + -0.5 976,527 - -0.2 976,527 - -0.4 976,527 - +0.3 976,912 + ABZR87_RS20455 0.38 -0.1 976,912 + ABZR87_RS20455 0.38 -0.2 976,912 + ABZR87_RS20455 0.38 +0.8 976,913 - ABZR87_RS20455 0.38 +1.4 976,913 - ABZR87_RS20455 0.38 +0.4 976,913 - ABZR87_RS20455 0.38 -1.7 976,913 - ABZR87_RS20455 0.38 -0.7 976,913 - ABZR87_RS20455 0.38 -0.4 976,913 - ABZR87_RS20455 0.38 -0.1 977,044 + ABZR87_RS20455 0.49 +0.5 977,204 - ABZR87_RS20455 0.62 -0.2 977,263 + ABZR87_RS20455 0.67 -0.1 977,263 + ABZR87_RS20455 0.67 +1.1 977,263 + ABZR87_RS20455 0.67 -1.0 977,264 - ABZR87_RS20455 0.67 -0.8 977,432 - ABZR87_RS20455 0.81 +0.6 977,674 + -1.4 977,675 - +1.1 977,675 - -0.3 977,698 + -1.6 977,699 - +0.4 977,699 - +0.8 977,699 - +0.4 977,848 + ABZR87_RS20460 0.17 +0.0 977,848 + ABZR87_RS20460 0.17 +0.3 977,916 - ABZR87_RS20460 0.24 +0.8 977,976 - ABZR87_RS20460 0.30 +0.1 978,089 - ABZR87_RS20460 0.41 -1.2 978,089 - ABZR87_RS20460 0.41 +0.6 978,121 + ABZR87_RS20460 0.44 -0.3 978,121 + ABZR87_RS20460 0.44 +1.0 978,121 + ABZR87_RS20460 0.44 +0.0 978,121 + ABZR87_RS20460 0.44 +0.0 978,175 + ABZR87_RS20460 0.49 +1.4 978,358 + ABZR87_RS20460 0.67 +1.7 978,358 + ABZR87_RS20460 0.67 +1.2 978,571 + ABZR87_RS20460 0.88 -1.1 978,572 - ABZR87_RS20460 0.88 -1.9 978,572 - ABZR87_RS20460 0.88 -0.2 978,605 - +2.1 978,605 - -1.0
Or see this region's nucleotide sequence