Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20210 and ABZR87_RS20215 are separated by 39 nucleotides ABZR87_RS20215 and ABZR87_RS20220 overlap by 37 nucleotides
ABZR87_RS20210: ABZR87_RS20210 - type VI secretion system ATPase TssH, at 919,933 to 922,656
_RS20210
ABZR87_RS20215: ABZR87_RS20215 - type VI secretion system baseplate subunit TssG, at 922,696 to 923,787
_RS20215
ABZR87_RS20220: ABZR87_RS20220 - type VI secretion system baseplate subunit TssF, at 923,751 to 925,601
_RS20220
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 921.941 kb on - strand, within ABZR87_RS20210 at 921.941 kb on - strand, within ABZR87_RS20210 at 921.941 kb on - strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.072 kb on + strand, within ABZR87_RS20210 at 922.073 kb on - strand, within ABZR87_RS20210 at 922.413 kb on + strand at 922.413 kb on + strand at 922.414 kb on - strand at 922.414 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.560 kb on - strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.718 kb on + strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 922.719 kb on - strand at 923.048 kb on + strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.114 kb on + strand, within ABZR87_RS20215 at 923.138 kb on + strand, within ABZR87_RS20215 at 923.177 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.304 kb on - strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.340 kb on - strand, within ABZR87_RS20215 at 923.430 kb on - strand, within ABZR87_RS20215 at 923.435 kb on + strand, within ABZR87_RS20215 at 923.752 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 924.001 kb on + strand, within ABZR87_RS20220 at 924.054 kb on + strand, within ABZR87_RS20220 at 924.237 kb on - strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.536 kb on - strand, within ABZR87_RS20220 at 924.580 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 921,941 - ABZR87_RS20210 0.74 +0.6 921,941 - ABZR87_RS20210 0.74 +0.3 921,941 - ABZR87_RS20210 0.74 -1.0 922,072 + ABZR87_RS20210 0.79 -0.4 922,072 + ABZR87_RS20210 0.79 +0.2 922,072 + ABZR87_RS20210 0.79 -0.4 922,073 - ABZR87_RS20210 0.79 +0.7 922,413 + -3.0 922,413 + -2.9 922,414 - -0.5 922,414 - -0.8 922,560 - +0.3 922,560 - +0.0 922,560 - -0.2 922,560 - +1.4 922,718 + -0.4 922,718 + +0.3 922,718 + +0.3 922,718 + -2.5 922,718 + +1.4 922,718 + +0.0 922,718 + -3.1 922,719 - +0.4 922,719 - +0.3 922,719 - -1.0 922,719 - -0.3 922,719 - +1.9 922,719 - +1.0 923,048 + ABZR87_RS20215 0.32 +0.5 923,049 - ABZR87_RS20215 0.32 +0.7 923,049 - ABZR87_RS20215 0.32 -0.6 923,114 + ABZR87_RS20215 0.38 -0.5 923,138 + ABZR87_RS20215 0.40 +0.1 923,177 + ABZR87_RS20215 0.44 +0.6 923,279 + ABZR87_RS20215 0.53 +1.9 923,279 + ABZR87_RS20215 0.53 +0.7 923,280 - ABZR87_RS20215 0.53 +0.7 923,280 - ABZR87_RS20215 0.53 +0.6 923,304 - ABZR87_RS20215 0.56 +0.2 923,321 + ABZR87_RS20215 0.57 +0.0 923,321 + ABZR87_RS20215 0.57 -1.1 923,339 + ABZR87_RS20215 0.59 +1.2 923,339 + ABZR87_RS20215 0.59 -0.0 923,339 + ABZR87_RS20215 0.59 -0.6 923,340 - ABZR87_RS20215 0.59 +0.0 923,430 - ABZR87_RS20215 0.67 +0.1 923,435 + ABZR87_RS20215 0.68 +0.5 923,752 + +1.8 923,854 + -0.2 923,854 + -0.4 923,854 + -0.0 923,854 + -0.9 923,854 + +1.0 923,855 - -0.2 923,855 - +1.4 923,855 - -0.1 923,855 - +3.8 923,855 - +0.1 924,001 + ABZR87_RS20220 0.14 -0.9 924,054 + ABZR87_RS20220 0.16 +1.8 924,237 - ABZR87_RS20220 0.26 +0.2 924,421 + ABZR87_RS20220 0.36 +0.6 924,421 + ABZR87_RS20220 0.36 -0.5 924,464 - ABZR87_RS20220 0.39 -0.0 924,464 - ABZR87_RS20220 0.39 -1.8 924,535 + ABZR87_RS20220 0.42 +0.5 924,535 + ABZR87_RS20220 0.42 -1.7 924,535 + ABZR87_RS20220 0.42 +1.1 924,536 - ABZR87_RS20220 0.42 +0.1 924,580 + ABZR87_RS20220 0.45 -0.2 924,593 + ABZR87_RS20220 0.45 +0.2 924,593 + ABZR87_RS20220 0.45 -0.3 924,593 + ABZR87_RS20220 0.45 -1.7 924,593 + ABZR87_RS20220 0.45 +0.7 924,594 - ABZR87_RS20220 0.46 -0.6 924,594 - ABZR87_RS20220 0.46 +1.4
Or see this region's nucleotide sequence