Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20210

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20205 and ABZR87_RS20210 are separated by 21 nucleotidesABZR87_RS20210 and ABZR87_RS20215 are separated by 39 nucleotides ABZR87_RS20205: ABZR87_RS20205 - type VI secretion system Vgr family protein, at 917,152 to 919,911 _RS20205 ABZR87_RS20210: ABZR87_RS20210 - type VI secretion system ATPase TssH, at 919,933 to 922,656 _RS20210 ABZR87_RS20215: ABZR87_RS20215 - type VI secretion system baseplate subunit TssG, at 922,696 to 923,787 _RS20215 Position (kb) 919 920 921 922 923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 919.034 kb on + strand, within ABZR87_RS20205at 919.035 kb on - strand, within ABZR87_RS20205at 919.035 kb on - strand, within ABZR87_RS20205at 919.134 kb on - strand, within ABZR87_RS20205at 919.154 kb on - strand, within ABZR87_RS20205at 919.297 kb on + strand, within ABZR87_RS20205at 919.340 kb on + strand, within ABZR87_RS20205at 919.341 kb on - strand, within ABZR87_RS20205at 919.341 kb on - strand, within ABZR87_RS20205at 919.398 kb on - strand, within ABZR87_RS20205at 919.424 kb on + strand, within ABZR87_RS20205at 919.425 kb on - strand, within ABZR87_RS20205at 919.696 kb on + strandat 919.753 kb on - strandat 919.753 kb on - strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.880 kb on - strandat 919.880 kb on - strandat 919.880 kb on - strandat 919.934 kb on + strandat 919.934 kb on + strandat 919.935 kb on - strandat 919.935 kb on - strandat 919.935 kb on - strandat 919.946 kb on + strandat 920.178 kb on + strandat 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.235 kb on - strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.283 kb on - strand, within ABZR87_RS20210at 920.283 kb on - strand, within ABZR87_RS20210at 920.570 kb on + strand, within ABZR87_RS20210at 920.579 kb on + strand, within ABZR87_RS20210at 920.579 kb on + strand, within ABZR87_RS20210at 920.580 kb on - strand, within ABZR87_RS20210at 920.628 kb on - strand, within ABZR87_RS20210at 920.628 kb on - strand, within ABZR87_RS20210at 920.654 kb on + strand, within ABZR87_RS20210at 920.706 kb on + strand, within ABZR87_RS20210at 921.429 kb on + strand, within ABZR87_RS20210at 921.429 kb on + strand, within ABZR87_RS20210at 921.430 kb on - strand, within ABZR87_RS20210at 921.430 kb on - strand, within ABZR87_RS20210at 921.430 kb on - strand, within ABZR87_RS20210at 921.430 kb on - strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.431 kb on + strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.432 kb on - strand, within ABZR87_RS20210at 921.605 kb on + strand, within ABZR87_RS20210at 921.605 kb on + strand, within ABZR87_RS20210at 921.605 kb on + strand, within ABZR87_RS20210at 921.605 kb on + strand, within ABZR87_RS20210at 921.606 kb on - strand, within ABZR87_RS20210at 921.606 kb on - strand, within ABZR87_RS20210at 921.606 kb on - strand, within ABZR87_RS20210at 921.606 kb on - strand, within ABZR87_RS20210at 921.614 kb on + strand, within ABZR87_RS20210at 921.615 kb on - strand, within ABZR87_RS20210at 921.615 kb on - strand, within ABZR87_RS20210at 921.941 kb on - strand, within ABZR87_RS20210at 921.941 kb on - strand, within ABZR87_RS20210at 921.941 kb on - strand, within ABZR87_RS20210at 922.072 kb on + strand, within ABZR87_RS20210at 922.072 kb on + strand, within ABZR87_RS20210at 922.072 kb on + strand, within ABZR87_RS20210at 922.073 kb on - strand, within ABZR87_RS20210at 922.413 kb on + strandat 922.413 kb on + strandat 922.414 kb on - strandat 922.414 kb on - strandat 922.560 kb on - strandat 922.560 kb on - strandat 922.560 kb on - strandat 922.560 kb on - strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.718 kb on + strandat 922.719 kb on - strandat 922.719 kb on - strandat 922.719 kb on - strandat 922.719 kb on - strandat 922.719 kb on - strandat 922.719 kb on - strandat 923.048 kb on + strand, within ABZR87_RS20215at 923.049 kb on - strand, within ABZR87_RS20215at 923.049 kb on - strand, within ABZR87_RS20215at 923.114 kb on + strand, within ABZR87_RS20215at 923.138 kb on + strand, within ABZR87_RS20215at 923.177 kb on + strand, within ABZR87_RS20215at 923.279 kb on + strand, within ABZR87_RS20215at 923.279 kb on + strand, within ABZR87_RS20215at 923.280 kb on - strand, within ABZR87_RS20215at 923.280 kb on - strand, within ABZR87_RS20215at 923.304 kb on - strand, within ABZR87_RS20215at 923.321 kb on + strand, within ABZR87_RS20215at 923.321 kb on + strand, within ABZR87_RS20215at 923.339 kb on + strand, within ABZR87_RS20215at 923.339 kb on + strand, within ABZR87_RS20215at 923.339 kb on + strand, within ABZR87_RS20215at 923.340 kb on - strand, within ABZR87_RS20215at 923.430 kb on - strand, within ABZR87_RS20215at 923.435 kb on + strand, within ABZR87_RS20215

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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919,034 + ABZR87_RS20205 0.68 -0.3
919,035 - ABZR87_RS20205 0.68 -1.8
919,035 - ABZR87_RS20205 0.68 -0.5
919,134 - ABZR87_RS20205 0.72 +0.8
919,154 - ABZR87_RS20205 0.73 -0.5
919,297 + ABZR87_RS20205 0.78 +0.2
919,340 + ABZR87_RS20205 0.79 -0.1
919,341 - ABZR87_RS20205 0.79 -0.0
919,341 - ABZR87_RS20205 0.79 +0.7
919,398 - ABZR87_RS20205 0.81 +0.6
919,424 + ABZR87_RS20205 0.82 -0.1
919,425 - ABZR87_RS20205 0.82 -2.7
919,696 + -0.4
919,753 - -0.6
919,753 - -1.2
919,879 + -0.3
919,879 + -0.9
919,879 + -1.3
919,879 + -0.3
919,880 - +0.3
919,880 - +1.2
919,880 - -1.1
919,934 + -0.5
919,934 + -0.5
919,935 - +0.5
919,935 - -0.1
919,935 - -0.7
919,946 + +0.3
920,178 + +0.5
920,234 + ABZR87_RS20210 0.11 +1.0
920,234 + ABZR87_RS20210 0.11 -0.0
920,234 + ABZR87_RS20210 0.11 +0.1
920,234 + ABZR87_RS20210 0.11 -0.9
920,235 - ABZR87_RS20210 0.11 -0.0
920,282 + ABZR87_RS20210 0.13 -0.2
920,282 + ABZR87_RS20210 0.13 -1.0
920,282 + ABZR87_RS20210 0.13 -1.6
920,283 - ABZR87_RS20210 0.13 +1.1
920,283 - ABZR87_RS20210 0.13 +0.3
920,570 + ABZR87_RS20210 0.23 +0.5
920,579 + ABZR87_RS20210 0.24 +0.2
920,579 + ABZR87_RS20210 0.24 -1.4
920,580 - ABZR87_RS20210 0.24 -0.2
920,628 - ABZR87_RS20210 0.26 +0.9
920,628 - ABZR87_RS20210 0.26 -1.3
920,654 + ABZR87_RS20210 0.26 +1.9
920,706 + ABZR87_RS20210 0.28 +0.3
921,429 + ABZR87_RS20210 0.55 +0.6
921,429 + ABZR87_RS20210 0.55 -1.0
921,430 - ABZR87_RS20210 0.55 +0.4
921,430 - ABZR87_RS20210 0.55 -1.6
921,430 - ABZR87_RS20210 0.55 +2.2
921,430 - ABZR87_RS20210 0.55 -1.6
921,431 + ABZR87_RS20210 0.55 -1.0
921,431 + ABZR87_RS20210 0.55 -0.6
921,431 + ABZR87_RS20210 0.55 -0.6
921,431 + ABZR87_RS20210 0.55 -0.7
921,431 + ABZR87_RS20210 0.55 -0.8
921,431 + ABZR87_RS20210 0.55 -0.2
921,432 - ABZR87_RS20210 0.55 -0.9
921,432 - ABZR87_RS20210 0.55 +0.1
921,432 - ABZR87_RS20210 0.55 +0.6
921,432 - ABZR87_RS20210 0.55 -1.5
921,432 - ABZR87_RS20210 0.55 -0.3
921,432 - ABZR87_RS20210 0.55 +0.9
921,432 - ABZR87_RS20210 0.55 +0.4
921,605 + ABZR87_RS20210 0.61 -1.1
921,605 + ABZR87_RS20210 0.61 +0.4
921,605 + ABZR87_RS20210 0.61 +0.1
921,605 + ABZR87_RS20210 0.61 -0.4
921,606 - ABZR87_RS20210 0.61 +0.6
921,606 - ABZR87_RS20210 0.61 -0.2
921,606 - ABZR87_RS20210 0.61 -0.2
921,606 - ABZR87_RS20210 0.61 -1.3
921,614 + ABZR87_RS20210 0.62 -0.6
921,615 - ABZR87_RS20210 0.62 -0.8
921,615 - ABZR87_RS20210 0.62 -0.3
921,941 - ABZR87_RS20210 0.74 +0.6
921,941 - ABZR87_RS20210 0.74 +0.3
921,941 - ABZR87_RS20210 0.74 -1.0
922,072 + ABZR87_RS20210 0.79 -0.4
922,072 + ABZR87_RS20210 0.79 +0.2
922,072 + ABZR87_RS20210 0.79 -0.4
922,073 - ABZR87_RS20210 0.79 +0.7
922,413 + -3.0
922,413 + -2.9
922,414 - -0.5
922,414 - -0.8
922,560 - +0.3
922,560 - +0.0
922,560 - -0.2
922,560 - +1.4
922,718 + -0.4
922,718 + +0.3
922,718 + +0.3
922,718 + -2.5
922,718 + +1.4
922,718 + +0.0
922,718 + -3.1
922,719 - +0.4
922,719 - +0.3
922,719 - -1.0
922,719 - -0.3
922,719 - +1.9
922,719 - +1.0
923,048 + ABZR87_RS20215 0.32 +0.5
923,049 - ABZR87_RS20215 0.32 +0.7
923,049 - ABZR87_RS20215 0.32 -0.6
923,114 + ABZR87_RS20215 0.38 -0.5
923,138 + ABZR87_RS20215 0.40 +0.1
923,177 + ABZR87_RS20215 0.44 +0.6
923,279 + ABZR87_RS20215 0.53 +1.9
923,279 + ABZR87_RS20215 0.53 +0.7
923,280 - ABZR87_RS20215 0.53 +0.7
923,280 - ABZR87_RS20215 0.53 +0.6
923,304 - ABZR87_RS20215 0.56 +0.2
923,321 + ABZR87_RS20215 0.57 +0.0
923,321 + ABZR87_RS20215 0.57 -1.1
923,339 + ABZR87_RS20215 0.59 +1.2
923,339 + ABZR87_RS20215 0.59 -0.0
923,339 + ABZR87_RS20215 0.59 -0.6
923,340 - ABZR87_RS20215 0.59 +0.0
923,430 - ABZR87_RS20215 0.67 +0.1
923,435 + ABZR87_RS20215 0.68 +0.5

Or see this region's nucleotide sequence