Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides ABZR87_RS19255 and ABZR87_RS19260 are separated by 56 nucleotides ABZR87_RS19260 and ABZR87_RS19265 overlap by 4 nucleotides
ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717
_RS19250
ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436
_RS19255
ABZR87_RS19260: ABZR87_RS19260 - type III secretion system cytoplasmic ring protein SctQ, at 682,493 to 683,578
_RS19260
ABZR87_RS19265: ABZR87_RS19265 - LuxR family transcriptional regulator, at 683,575 to 684,423
_RS19265
Position (kb) 682
683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 681.891 kb on + strand, within ABZR87_RS19255 at 681.943 kb on + strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.451 kb on + strand at 682.451 kb on + strand at 682.452 kb on - strand at 682.494 kb on + strand at 682.495 kb on - strand at 682.495 kb on - strand at 682.520 kb on + strand at 682.520 kb on + strand at 682.521 kb on - strand at 683.023 kb on + strand, within ABZR87_RS19260 at 683.024 kb on - strand, within ABZR87_RS19260 at 683.207 kb on + strand, within ABZR87_RS19260 at 683.207 kb on + strand, within ABZR87_RS19260 at 683.207 kb on + strand, within ABZR87_RS19260 at 683.208 kb on - strand, within ABZR87_RS19260 at 683.208 kb on - strand, within ABZR87_RS19260 at 683.324 kb on + strand, within ABZR87_RS19260 at 683.403 kb on - strand, within ABZR87_RS19260 at 683.464 kb on - strand, within ABZR87_RS19260 at 683.478 kb on - strand at 683.490 kb on - strand at 683.572 kb on + strand at 683.572 kb on + strand at 683.603 kb on + strand at 683.604 kb on - strand at 683.633 kb on + strand at 683.660 kb on + strand, within ABZR87_RS19265 at 683.661 kb on - strand, within ABZR87_RS19265 at 683.837 kb on + strand, within ABZR87_RS19265 at 684.104 kb on + strand, within ABZR87_RS19265 at 684.105 kb on - strand, within ABZR87_RS19265 at 684.119 kb on + strand, within ABZR87_RS19265 at 684.147 kb on - strand, within ABZR87_RS19265 at 684.175 kb on - strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.203 kb on + strand, within ABZR87_RS19265 at 684.461 kb on + strand at 684.489 kb on - strand at 684.578 kb on + strand at 684.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 681,891 + ABZR87_RS19255 0.17 -0.4 681,943 + ABZR87_RS19255 0.25 +0.9 681,944 - ABZR87_RS19255 0.25 -0.4 681,944 - ABZR87_RS19255 0.25 -1.3 682,100 + ABZR87_RS19255 0.49 -0.3 682,100 + ABZR87_RS19255 0.49 +1.8 682,101 - ABZR87_RS19255 0.49 -0.2 682,101 - ABZR87_RS19255 0.49 +0.4 682,349 - ABZR87_RS19255 0.87 -0.2 682,349 - ABZR87_RS19255 0.87 -1.0 682,451 + -0.2 682,451 + +0.5 682,452 - -0.4 682,494 + -0.2 682,495 - +2.1 682,495 - +0.6 682,520 + +0.3 682,520 + -0.0 682,521 - +0.9 683,023 + ABZR87_RS19260 0.49 -0.3 683,024 - ABZR87_RS19260 0.49 +0.2 683,207 + ABZR87_RS19260 0.66 -1.2 683,207 + ABZR87_RS19260 0.66 -0.0 683,207 + ABZR87_RS19260 0.66 -0.5 683,208 - ABZR87_RS19260 0.66 +1.1 683,208 - ABZR87_RS19260 0.66 +0.3 683,324 + ABZR87_RS19260 0.77 +0.1 683,403 - ABZR87_RS19260 0.84 +0.9 683,464 - ABZR87_RS19260 0.89 +0.7 683,478 - -0.2 683,490 - -0.9 683,572 + +1.5 683,572 + -0.5 683,603 + +1.3 683,604 - +0.2 683,633 + -0.4 683,660 + ABZR87_RS19265 0.10 -1.7 683,661 - ABZR87_RS19265 0.10 +1.4 683,837 + ABZR87_RS19265 0.31 -0.2 684,104 + ABZR87_RS19265 0.62 -0.2 684,105 - ABZR87_RS19265 0.62 -2.2 684,119 + ABZR87_RS19265 0.64 -0.5 684,147 - ABZR87_RS19265 0.67 -1.4 684,175 - ABZR87_RS19265 0.71 +1.2 684,203 + ABZR87_RS19265 0.74 -0.7 684,203 + ABZR87_RS19265 0.74 -0.2 684,461 + -0.0 684,489 - -1.2 684,578 + +0.5 684,578 + +1.9
Or see this region's nucleotide sequence