Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19215 and ABZR87_RS19220 are separated by 122 nucleotides ABZR87_RS19220 and ABZR87_RS19225 are separated by 66 nucleotides ABZR87_RS19225 and ABZR87_RS19230 are separated by 7 nucleotides ABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotides
ABZR87_RS19215: ABZR87_RS19215 - EAL domain-containing protein, at 673,175 to 675,925
_RS19215
ABZR87_RS19220: ABZR87_RS19220 - DUF6622 family protein, at 676,048 to 676,551
_RS19220
ABZR87_RS19225: ABZR87_RS19225 - TOBE domain-containing protein, at 676,618 to 677,430
_RS19225
ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935
_RS19230
ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681
_RS19235
Position (kb) 676
677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.623 kb on + strand, within ABZR87_RS19215 at 675.624 kb on - strand, within ABZR87_RS19215 at 675.830 kb on + strand at 675.830 kb on + strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 675.831 kb on - strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.016 kb on + strand at 676.017 kb on - strand at 676.017 kb on - strand at 676.062 kb on + strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.063 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.081 kb on - strand at 676.207 kb on + strand, within ABZR87_RS19220 at 676.207 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.291 kb on + strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.292 kb on - strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.337 kb on + strand, within ABZR87_RS19220 at 676.396 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.402 kb on + strand, within ABZR87_RS19220 at 676.528 kb on - strand at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.753 kb on + strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 676.754 kb on - strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.004 kb on + strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.005 kb on - strand, within ABZR87_RS19225 at 677.242 kb on + strand, within ABZR87_RS19225 at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.466 kb on - strand at 677.600 kb on + strand, within ABZR87_RS19230 at 677.600 kb on + strand, within ABZR87_RS19230 at 677.601 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.670 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.673 kb on - strand, within ABZR87_RS19230 at 677.706 kb on - strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.875 kb on - strand, within ABZR87_RS19230 at 678.040 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.407 kb on + strand, within ABZR87_RS19235 at 678.408 kb on - strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 675,623 + ABZR87_RS19215 0.89 +0.6 675,623 + ABZR87_RS19215 0.89 +1.1 675,624 - ABZR87_RS19215 0.89 +1.7 675,830 + +1.0 675,830 + +1.6 675,831 - +1.3 675,831 - +0.7 675,831 - -0.2 675,831 - +2.2 675,831 - +0.9 676,016 + +1.0 676,016 + +0.0 676,016 + -0.2 676,016 + -0.3 676,017 - -0.2 676,017 - -0.8 676,062 + -1.7 676,063 - +1.4 676,063 - -1.4 676,063 - -1.0 676,063 - +1.1 676,081 - -1.5 676,081 - +2.7 676,081 - -0.1 676,207 + ABZR87_RS19220 0.32 -1.2 676,207 + ABZR87_RS19220 0.32 -0.9 676,291 + ABZR87_RS19220 0.48 -0.3 676,291 + ABZR87_RS19220 0.48 +0.9 676,291 + ABZR87_RS19220 0.48 +0.6 676,291 + ABZR87_RS19220 0.48 +0.2 676,291 + ABZR87_RS19220 0.48 -0.3 676,291 + ABZR87_RS19220 0.48 +1.0 676,291 + ABZR87_RS19220 0.48 -1.8 676,292 - ABZR87_RS19220 0.48 -1.2 676,292 - ABZR87_RS19220 0.48 +0.2 676,292 - ABZR87_RS19220 0.48 -0.1 676,292 - ABZR87_RS19220 0.48 -0.1 676,292 - ABZR87_RS19220 0.48 +0.3 676,292 - ABZR87_RS19220 0.48 -2.0 676,292 - ABZR87_RS19220 0.48 -0.2 676,292 - ABZR87_RS19220 0.48 +0.5 676,292 - ABZR87_RS19220 0.48 -0.4 676,337 + ABZR87_RS19220 0.57 -0.5 676,337 + ABZR87_RS19220 0.57 -0.1 676,396 + ABZR87_RS19220 0.69 -0.5 676,402 + ABZR87_RS19220 0.70 +1.6 676,402 + ABZR87_RS19220 0.70 +0.6 676,528 - -3.1 676,753 + ABZR87_RS19225 0.17 -0.3 676,753 + ABZR87_RS19225 0.17 -1.3 676,753 + ABZR87_RS19225 0.17 -0.9 676,754 - ABZR87_RS19225 0.17 +1.4 676,754 - ABZR87_RS19225 0.17 -0.2 677,004 + ABZR87_RS19225 0.47 -0.7 677,004 + ABZR87_RS19225 0.47 -0.6 677,004 + ABZR87_RS19225 0.47 -1.0 677,004 + ABZR87_RS19225 0.47 +0.2 677,005 - ABZR87_RS19225 0.48 -0.8 677,005 - ABZR87_RS19225 0.48 -0.1 677,242 + ABZR87_RS19225 0.77 -0.5 677,466 - -0.6 677,466 - +0.1 677,466 - -1.8 677,466 - -0.4 677,600 + ABZR87_RS19230 0.33 -0.6 677,600 + ABZR87_RS19230 0.33 +0.9 677,601 - ABZR87_RS19230 0.33 -1.3 677,670 - ABZR87_RS19230 0.47 +0.1 677,670 - ABZR87_RS19230 0.47 +0.2 677,670 - ABZR87_RS19230 0.47 -0.2 677,673 - ABZR87_RS19230 0.47 -0.1 677,673 - ABZR87_RS19230 0.47 +0.5 677,706 - ABZR87_RS19230 0.54 +3.2 677,874 + ABZR87_RS19230 0.88 +3.2 677,874 + ABZR87_RS19230 0.88 +0.7 677,875 - ABZR87_RS19230 0.88 -0.4 678,040 + ABZR87_RS19235 0.14 -1.7 678,061 + ABZR87_RS19235 0.17 +0.4 678,061 + ABZR87_RS19235 0.17 +0.6 678,061 + ABZR87_RS19235 0.17 +0.1 678,062 - ABZR87_RS19235 0.17 -0.5 678,062 - ABZR87_RS19235 0.17 -0.6 678,062 - ABZR87_RS19235 0.17 -1.1 678,062 - ABZR87_RS19235 0.17 -0.7 678,082 - ABZR87_RS19235 0.19 -0.8 678,082 - ABZR87_RS19235 0.19 -1.1 678,407 + ABZR87_RS19235 0.63 -0.2 678,408 - ABZR87_RS19235 0.63 +1.1 678,422 + ABZR87_RS19235 0.65 +0.1 678,422 + ABZR87_RS19235 0.65 -0.2
Or see this region's nucleotide sequence