Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18540 and ABZR87_RS18545 are separated by 7 nucleotides ABZR87_RS18545 and ABZR87_RS18550 are separated by 302 nucleotides
ABZR87_RS18540: ABZR87_RS18540 - branched-chain amino acid aminotransferase, at 514,777 to 515,877
_RS18540
ABZR87_RS18545: ABZR87_RS18545 - alpha/beta hydrolase, at 515,885 to 516,697
_RS18545
ABZR87_RS18550: ABZR87_RS18550 - alkane 1-monooxygenase, at 517,000 to 518,163
_RS18550
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 514.910 kb on - strand, within ABZR87_RS18540 at 514.994 kb on - strand, within ABZR87_RS18540 at 514.994 kb on - strand, within ABZR87_RS18540 at 515.026 kb on + strand, within ABZR87_RS18540 at 515.026 kb on + strand, within ABZR87_RS18540 at 515.206 kb on + strand, within ABZR87_RS18540 at 515.206 kb on + strand, within ABZR87_RS18540 at 515.267 kb on - strand, within ABZR87_RS18540 at 515.302 kb on + strand, within ABZR87_RS18540 at 515.302 kb on + strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.303 kb on - strand, within ABZR87_RS18540 at 515.353 kb on + strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.354 kb on - strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.404 kb on + strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.405 kb on - strand, within ABZR87_RS18540 at 515.644 kb on + strand, within ABZR87_RS18540 at 515.957 kb on + strand at 515.958 kb on - strand at 515.958 kb on - strand at 515.958 kb on - strand at 516.098 kb on + strand, within ABZR87_RS18545 at 516.098 kb on + strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.099 kb on - strand, within ABZR87_RS18545 at 516.131 kb on + strand, within ABZR87_RS18545 at 516.173 kb on + strand, within ABZR87_RS18545 at 516.276 kb on - strand, within ABZR87_RS18545 at 516.545 kb on + strand, within ABZR87_RS18545 at 516.545 kb on + strand, within ABZR87_RS18545 at 516.725 kb on + strand at 516.726 kb on - strand at 516.874 kb on + strand at 516.909 kb on + strand at 516.910 kb on - strand at 516.911 kb on + strand at 516.912 kb on - strand at 516.955 kb on + strand at 516.955 kb on + strand at 516.955 kb on + strand at 517.051 kb on + strand at 517.052 kb on - strand at 517.052 kb on - strand at 517.249 kb on + strand, within ABZR87_RS18550 at 517.250 kb on - strand, within ABZR87_RS18550 at 517.252 kb on + strand, within ABZR87_RS18550 at 517.253 kb on - strand, within ABZR87_RS18550 at 517.253 kb on - strand, within ABZR87_RS18550 at 517.253 kb on - strand, within ABZR87_RS18550 at 517.268 kb on - strand, within ABZR87_RS18550 at 517.268 kb on - strand, within ABZR87_RS18550 at 517.327 kb on + strand, within ABZR87_RS18550 at 517.327 kb on + strand, within ABZR87_RS18550 at 517.327 kb on + strand, within ABZR87_RS18550 at 517.327 kb on + strand, within ABZR87_RS18550 at 517.327 kb on + strand, within ABZR87_RS18550 at 517.328 kb on - strand, within ABZR87_RS18550 at 517.343 kb on - strand, within ABZR87_RS18550 at 517.348 kb on + strand, within ABZR87_RS18550 at 517.348 kb on + strand, within ABZR87_RS18550 at 517.348 kb on + strand, within ABZR87_RS18550 at 517.349 kb on - strand, within ABZR87_RS18550 at 517.399 kb on - strand, within ABZR87_RS18550 at 517.474 kb on + strand, within ABZR87_RS18550 at 517.475 kb on - strand, within ABZR87_RS18550 at 517.475 kb on - strand, within ABZR87_RS18550 at 517.475 kb on - strand, within ABZR87_RS18550 at 517.553 kb on - strand, within ABZR87_RS18550
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 514,910 - ABZR87_RS18540 0.12 +0.3 514,994 - ABZR87_RS18540 0.20 -0.8 514,994 - ABZR87_RS18540 0.20 -0.4 515,026 + ABZR87_RS18540 0.23 -1.1 515,026 + ABZR87_RS18540 0.23 -0.3 515,206 + ABZR87_RS18540 0.39 -3.1 515,206 + ABZR87_RS18540 0.39 -0.7 515,267 - ABZR87_RS18540 0.45 +2.1 515,302 + ABZR87_RS18540 0.48 +0.3 515,302 + ABZR87_RS18540 0.48 -1.2 515,303 - ABZR87_RS18540 0.48 +0.5 515,303 - ABZR87_RS18540 0.48 +1.3 515,303 - ABZR87_RS18540 0.48 +0.2 515,353 + ABZR87_RS18540 0.52 -1.0 515,354 - ABZR87_RS18540 0.52 -0.4 515,354 - ABZR87_RS18540 0.52 -0.8 515,354 - ABZR87_RS18540 0.52 -1.1 515,354 - ABZR87_RS18540 0.52 +0.3 515,404 + ABZR87_RS18540 0.57 -0.0 515,404 + ABZR87_RS18540 0.57 +0.6 515,404 + ABZR87_RS18540 0.57 -0.5 515,404 + ABZR87_RS18540 0.57 +0.3 515,404 + ABZR87_RS18540 0.57 -0.1 515,404 + ABZR87_RS18540 0.57 -1.1 515,404 + ABZR87_RS18540 0.57 -0.0 515,405 - ABZR87_RS18540 0.57 +1.3 515,405 - ABZR87_RS18540 0.57 -0.2 515,405 - ABZR87_RS18540 0.57 -0.3 515,405 - ABZR87_RS18540 0.57 +2.2 515,405 - ABZR87_RS18540 0.57 -0.5 515,405 - ABZR87_RS18540 0.57 -0.5 515,644 + ABZR87_RS18540 0.79 +0.1 515,957 + +0.4 515,958 - -0.0 515,958 - -0.2 515,958 - +0.6 516,098 + ABZR87_RS18545 0.26 +0.7 516,098 + ABZR87_RS18545 0.26 +0.5 516,099 - ABZR87_RS18545 0.26 -0.4 516,099 - ABZR87_RS18545 0.26 +1.2 516,099 - ABZR87_RS18545 0.26 -1.0 516,099 - ABZR87_RS18545 0.26 -1.6 516,131 + ABZR87_RS18545 0.30 +1.1 516,173 + ABZR87_RS18545 0.35 -0.1 516,276 - ABZR87_RS18545 0.48 -0.8 516,545 + ABZR87_RS18545 0.81 -1.8 516,545 + ABZR87_RS18545 0.81 -1.0 516,725 + +0.1 516,726 - -0.2 516,874 + -0.5 516,909 + +0.3 516,910 - -0.2 516,911 + +1.3 516,912 - -1.0 516,955 + -0.7 516,955 + +0.3 516,955 + +0.8 517,051 + +1.2 517,052 - -0.5 517,052 - +1.5 517,249 + ABZR87_RS18550 0.21 -0.1 517,250 - ABZR87_RS18550 0.21 +0.1 517,252 + ABZR87_RS18550 0.22 -0.2 517,253 - ABZR87_RS18550 0.22 -0.1 517,253 - ABZR87_RS18550 0.22 +0.2 517,253 - ABZR87_RS18550 0.22 -1.5 517,268 - ABZR87_RS18550 0.23 +1.5 517,268 - ABZR87_RS18550 0.23 +0.1 517,327 + ABZR87_RS18550 0.28 -0.3 517,327 + ABZR87_RS18550 0.28 -1.0 517,327 + ABZR87_RS18550 0.28 +1.1 517,327 + ABZR87_RS18550 0.28 +2.3 517,327 + ABZR87_RS18550 0.28 +0.2 517,328 - ABZR87_RS18550 0.28 -0.6 517,343 - ABZR87_RS18550 0.29 -1.2 517,348 + ABZR87_RS18550 0.30 -1.7 517,348 + ABZR87_RS18550 0.30 -0.5 517,348 + ABZR87_RS18550 0.30 +0.3 517,349 - ABZR87_RS18550 0.30 -0.2 517,399 - ABZR87_RS18550 0.34 +0.9 517,474 + ABZR87_RS18550 0.41 +0.3 517,475 - ABZR87_RS18550 0.41 -0.6 517,475 - ABZR87_RS18550 0.41 +1.2 517,475 - ABZR87_RS18550 0.41 -0.6 517,553 - ABZR87_RS18550 0.48 -0.8
Or see this region's nucleotide sequence