Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18220 and ABZR87_RS18225 are separated by 81 nucleotides ABZR87_RS18225 and ABZR87_RS18230 overlap by 4 nucleotides
ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165
_RS18220
ABZR87_RS18225: ABZR87_RS18225 - D-xylose ABC transporter ATP-binding protein, at 459,247 to 460,830
_RS18225
ABZR87_RS18230: ABZR87_RS18230 - sugar ABC transporter permease, at 460,827 to 462,029
_RS18230
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 458.303 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.501 kb on - strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.536 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.587 kb on + strand, within ABZR87_RS18220 at 458.588 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220 at 458.612 kb on - strand, within ABZR87_RS18220 at 458.956 kb on + strand, within ABZR87_RS18220 at 458.956 kb on + strand, within ABZR87_RS18220 at 458.957 kb on - strand, within ABZR87_RS18220 at 459.031 kb on + strand, within ABZR87_RS18220 at 459.032 kb on - strand, within ABZR87_RS18220 at 459.043 kb on + strand, within ABZR87_RS18220 at 459.137 kb on - strand at 459.230 kb on + strand at 459.230 kb on + strand at 459.316 kb on - strand at 459.591 kb on + strand, within ABZR87_RS18225 at 459.591 kb on + strand, within ABZR87_RS18225 at 459.591 kb on + strand, within ABZR87_RS18225 at 459.598 kb on + strand, within ABZR87_RS18225 at 459.599 kb on - strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.610 kb on + strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.611 kb on - strand, within ABZR87_RS18225 at 459.682 kb on + strand, within ABZR87_RS18225 at 459.683 kb on - strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 459.844 kb on + strand, within ABZR87_RS18225 at 460.055 kb on - strand, within ABZR87_RS18225 at 460.186 kb on + strand, within ABZR87_RS18225 at 460.577 kb on - strand, within ABZR87_RS18225 at 460.585 kb on + strand, within ABZR87_RS18225 at 460.586 kb on - strand, within ABZR87_RS18225 at 460.586 kb on - strand, within ABZR87_RS18225 at 460.586 kb on - strand, within ABZR87_RS18225 at 460.608 kb on + strand, within ABZR87_RS18225 at 460.609 kb on - strand, within ABZR87_RS18225 at 460.881 kb on - strand at 460.923 kb on + strand at 461.152 kb on + strand, within ABZR87_RS18230 at 461.371 kb on - strand, within ABZR87_RS18230 at 461.371 kb on - strand, within ABZR87_RS18230 at 461.554 kb on + strand, within ABZR87_RS18230 at 461.556 kb on + strand, within ABZR87_RS18230 at 461.557 kb on - strand, within ABZR87_RS18230 at 461.557 kb on - strand, within ABZR87_RS18230 at 461.557 kb on - strand, within ABZR87_RS18230 at 461.645 kb on + strand, within ABZR87_RS18230 at 461.646 kb on - strand, within ABZR87_RS18230 at 461.649 kb on + strand, within ABZR87_RS18230 at 461.649 kb on + strand, within ABZR87_RS18230 at 461.649 kb on + strand, within ABZR87_RS18230
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 458,303 - ABZR87_RS18220 0.16 -0.1 458,501 - ABZR87_RS18220 0.35 +0.4 458,501 - ABZR87_RS18220 0.35 +0.1 458,536 + ABZR87_RS18220 0.39 -0.6 458,536 + ABZR87_RS18220 0.39 -1.5 458,536 + ABZR87_RS18220 0.39 -0.7 458,587 + ABZR87_RS18220 0.44 +2.3 458,587 + ABZR87_RS18220 0.44 -0.0 458,588 - ABZR87_RS18220 0.44 +1.0 458,612 - ABZR87_RS18220 0.46 -0.7 458,612 - ABZR87_RS18220 0.46 +2.4 458,956 + ABZR87_RS18220 0.80 -0.6 458,956 + ABZR87_RS18220 0.80 -1.2 458,957 - ABZR87_RS18220 0.80 +1.0 459,031 + ABZR87_RS18220 0.87 -0.8 459,032 - ABZR87_RS18220 0.87 -1.1 459,043 + ABZR87_RS18220 0.88 +1.8 459,137 - +0.3 459,230 + -0.2 459,230 + -1.1 459,316 - +1.1 459,591 + ABZR87_RS18225 0.22 -1.5 459,591 + ABZR87_RS18225 0.22 -0.4 459,591 + ABZR87_RS18225 0.22 -0.6 459,598 + ABZR87_RS18225 0.22 -0.2 459,599 - ABZR87_RS18225 0.22 -0.0 459,610 + ABZR87_RS18225 0.23 -0.2 459,610 + ABZR87_RS18225 0.23 -1.0 459,610 + ABZR87_RS18225 0.23 +0.6 459,611 - ABZR87_RS18225 0.23 +0.4 459,611 - ABZR87_RS18225 0.23 -0.8 459,611 - ABZR87_RS18225 0.23 -0.2 459,682 + ABZR87_RS18225 0.27 -0.1 459,683 - ABZR87_RS18225 0.28 +0.2 459,844 + ABZR87_RS18225 0.38 +0.9 459,844 + ABZR87_RS18225 0.38 -1.3 459,844 + ABZR87_RS18225 0.38 -0.3 459,844 + ABZR87_RS18225 0.38 -0.2 459,844 + ABZR87_RS18225 0.38 +0.1 460,055 - ABZR87_RS18225 0.51 -2.3 460,186 + ABZR87_RS18225 0.59 -0.2 460,577 - ABZR87_RS18225 0.84 -0.1 460,585 + ABZR87_RS18225 0.84 -2.4 460,586 - ABZR87_RS18225 0.85 +0.3 460,586 - ABZR87_RS18225 0.85 +0.2 460,586 - ABZR87_RS18225 0.85 +0.1 460,608 + ABZR87_RS18225 0.86 +0.7 460,609 - ABZR87_RS18225 0.86 -0.6 460,881 - +0.9 460,923 + +1.0 461,152 + ABZR87_RS18230 0.27 +3.1 461,371 - ABZR87_RS18230 0.45 -2.6 461,371 - ABZR87_RS18230 0.45 +0.0 461,554 + ABZR87_RS18230 0.60 -0.3 461,556 + ABZR87_RS18230 0.61 -0.4 461,557 - ABZR87_RS18230 0.61 -0.6 461,557 - ABZR87_RS18230 0.61 -1.9 461,557 - ABZR87_RS18230 0.61 -2.4 461,645 + ABZR87_RS18230 0.68 +0.4 461,646 - ABZR87_RS18230 0.68 -0.2 461,649 + ABZR87_RS18230 0.68 -2.3 461,649 + ABZR87_RS18230 0.68 -2.1 461,649 + ABZR87_RS18230 0.68 -1.0
Or see this region's nucleotide sequence