Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17915 and ABZR87_RS17920 are separated by 2 nucleotides ABZR87_RS17920 and ABZR87_RS17925 overlap by 4 nucleotides
ABZR87_RS17915: ABZR87_RS17915 - CoA transferase, at 375,178 to 376,365
_RS17915
ABZR87_RS17920: ABZR87_RS17920 - citryl-CoA lyase, at 376,368 to 377,222
_RS17920
ABZR87_RS17925: ABZR87_RS17925 - SMP-30/gluconolactonase/LRE family protein, at 377,219 to 378,115
_RS17925
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 375.475 kb on + strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.476 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.512 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.602 kb on - strand, within ABZR87_RS17915 at 375.753 kb on + strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.754 kb on - strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.829 kb on + strand, within ABZR87_RS17915 at 375.830 kb on - strand, within ABZR87_RS17915 at 376.290 kb on + strand at 376.426 kb on - strand at 376.459 kb on + strand, within ABZR87_RS17920 at 376.460 kb on - strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.824 kb on + strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.825 kb on - strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 376.929 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.022 kb on + strand, within ABZR87_RS17920 at 377.023 kb on - strand, within ABZR87_RS17920 at 377.160 kb on + strand at 377.167 kb on - strand at 377.167 kb on - strand at 377.169 kb on - strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.225 kb on + strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.226 kb on - strand at 377.453 kb on + strand, within ABZR87_RS17925 at 377.453 kb on + strand, within ABZR87_RS17925 at 377.514 kb on - strand, within ABZR87_RS17925 at 377.514 kb on - strand, within ABZR87_RS17925 at 377.569 kb on + strand, within ABZR87_RS17925 at 377.570 kb on - strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.636 kb on + strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.637 kb on - strand, within ABZR87_RS17925 at 377.688 kb on - strand, within ABZR87_RS17925 at 377.870 kb on + strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 377.871 kb on - strand, within ABZR87_RS17925 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.078 kb on + strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.154 kb on - strand at 378.154 kb on - strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 375,475 + ABZR87_RS17915 0.25 +0.3 375,476 - ABZR87_RS17915 0.25 +0.3 375,476 - ABZR87_RS17915 0.25 -0.7 375,512 - ABZR87_RS17915 0.28 -0.4 375,512 - ABZR87_RS17915 0.28 -1.8 375,602 - ABZR87_RS17915 0.36 +0.4 375,602 - ABZR87_RS17915 0.36 -0.7 375,602 - ABZR87_RS17915 0.36 +0.1 375,602 - ABZR87_RS17915 0.36 +1.4 375,753 + ABZR87_RS17915 0.48 -0.3 375,754 - ABZR87_RS17915 0.48 -0.7 375,754 - ABZR87_RS17915 0.48 -0.8 375,829 + ABZR87_RS17915 0.55 -0.6 375,829 + ABZR87_RS17915 0.55 +0.1 375,830 - ABZR87_RS17915 0.55 +0.8 376,290 + +0.3 376,426 - -0.5 376,459 + ABZR87_RS17920 0.11 +0.6 376,460 - ABZR87_RS17920 0.11 +1.3 376,824 + ABZR87_RS17920 0.53 +4.8 376,824 + ABZR87_RS17920 0.53 -0.1 376,824 + ABZR87_RS17920 0.53 +1.9 376,824 + ABZR87_RS17920 0.53 -0.4 376,825 - ABZR87_RS17920 0.53 -1.4 376,825 - ABZR87_RS17920 0.53 -0.3 376,929 + ABZR87_RS17920 0.66 +0.1 376,929 + ABZR87_RS17920 0.66 -0.2 376,929 + ABZR87_RS17920 0.66 +0.2 377,022 + ABZR87_RS17920 0.76 -0.1 377,022 + ABZR87_RS17920 0.76 -1.8 377,023 - ABZR87_RS17920 0.77 -0.0 377,160 + +0.3 377,167 - -1.0 377,167 - +0.4 377,169 - -0.4 377,225 + +1.2 377,225 + -0.5 377,225 + -0.4 377,225 + +0.7 377,225 + +0.6 377,225 + +0.1 377,225 + -0.5 377,226 - -0.2 377,226 - +0.5 377,226 - +0.1 377,226 - +0.0 377,226 - +0.2 377,453 + ABZR87_RS17925 0.26 -1.0 377,453 + ABZR87_RS17925 0.26 +0.8 377,514 - ABZR87_RS17925 0.33 -2.5 377,514 - ABZR87_RS17925 0.33 +0.1 377,569 + ABZR87_RS17925 0.39 +0.6 377,570 - ABZR87_RS17925 0.39 +0.5 377,636 + ABZR87_RS17925 0.46 -0.1 377,636 + ABZR87_RS17925 0.46 +0.3 377,636 + ABZR87_RS17925 0.46 +0.2 377,637 - ABZR87_RS17925 0.47 +0.8 377,637 - ABZR87_RS17925 0.47 +1.6 377,637 - ABZR87_RS17925 0.47 +0.9 377,637 - ABZR87_RS17925 0.47 +1.0 377,637 - ABZR87_RS17925 0.47 -0.7 377,637 - ABZR87_RS17925 0.47 +0.3 377,637 - ABZR87_RS17925 0.47 -1.2 377,688 - ABZR87_RS17925 0.52 +0.9 377,870 + ABZR87_RS17925 0.73 +0.2 377,871 - ABZR87_RS17925 0.73 -0.2 377,871 - ABZR87_RS17925 0.73 +0.8 377,871 - ABZR87_RS17925 0.73 +0.3 378,013 + ABZR87_RS17925 0.89 -2.5 378,013 + ABZR87_RS17925 0.89 +0.3 378,078 + -1.3 378,079 - -1.7 378,079 - +1.1 378,079 - +1.3 378,154 - +0.2 378,154 - -0.9 378,164 + +0.2 378,164 + +0.1 378,164 + -0.6 378,164 + -0.8 378,164 + +4.5
Or see this region's nucleotide sequence