Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16850 and ABZR87_RS16855 are separated by 39 nucleotides ABZR87_RS16855 and ABZR87_RS16860 overlap by 8 nucleotides ABZR87_RS16860 and ABZR87_RS16865 are separated by 33 nucleotides
ABZR87_RS16850: ABZR87_RS16850 - HD domain-containing phosphohydrolase, at 135,051 to 136,436
_RS16850
ABZR87_RS16855: ABZR87_RS16855 - chemotaxis protein CheC, at 136,476 to 137,087
_RS16855
ABZR87_RS16860: ABZR87_RS16860 - response regulator, at 137,080 to 137,448
_RS16860
ABZR87_RS16865: ABZR87_RS16865 - ATP-binding protein, at 137,482 to 138,867
_RS16865
Position (kb) 137
138 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 136.223 kb on + strand, within ABZR87_RS16850 at 136.224 kb on - strand, within ABZR87_RS16850 at 136.224 kb on - strand, within ABZR87_RS16850 at 136.257 kb on + strand, within ABZR87_RS16850 at 136.302 kb on + strand at 136.427 kb on - strand at 136.427 kb on - strand at 136.427 kb on - strand at 136.605 kb on + strand, within ABZR87_RS16855 at 136.605 kb on + strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.096 kb on + strand at 137.097 kb on - strand at 137.244 kb on + strand, within ABZR87_RS16860 at 137.244 kb on + strand, within ABZR87_RS16860 at 137.245 kb on - strand, within ABZR87_RS16860 at 137.468 kb on + strand at 137.469 kb on - strand at 137.472 kb on + strand at 137.472 kb on + strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.473 kb on - strand at 137.552 kb on - strand at 137.552 kb on - strand at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.627 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.676 kb on + strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.677 kb on - strand, within ABZR87_RS16865 at 137.717 kb on - strand, within ABZR87_RS16865 at 137.717 kb on - strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.831 kb on + strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.832 kb on - strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.889 kb on + strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.890 kb on - strand, within ABZR87_RS16865 at 137.915 kb on + strand, within ABZR87_RS16865 at 137.916 kb on - strand, within ABZR87_RS16865 at 137.939 kb on + strand, within ABZR87_RS16865 at 137.940 kb on - strand, within ABZR87_RS16865 at 137.940 kb on - strand, within ABZR87_RS16865 at 138.023 kb on - strand, within ABZR87_RS16865 at 138.023 kb on - strand, within ABZR87_RS16865 at 138.091 kb on + strand, within ABZR87_RS16865 at 138.209 kb on + strand, within ABZR87_RS16865 at 138.209 kb on + strand, within ABZR87_RS16865 at 138.210 kb on - strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.230 kb on + strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865 at 138.231 kb on - strand, within ABZR87_RS16865
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 136,223 + ABZR87_RS16850 0.85 -0.1 136,224 - ABZR87_RS16850 0.85 +0.8 136,224 - ABZR87_RS16850 0.85 +0.1 136,257 + ABZR87_RS16850 0.87 +0.9 136,302 + -0.7 136,427 - +0.3 136,427 - -0.6 136,427 - +0.8 136,605 + ABZR87_RS16855 0.21 +1.2 136,605 + ABZR87_RS16855 0.21 +3.5 136,716 - ABZR87_RS16855 0.39 +1.6 136,716 - ABZR87_RS16855 0.39 +0.2 136,716 - ABZR87_RS16855 0.39 +0.6 136,793 - ABZR87_RS16855 0.52 -2.5 136,793 - ABZR87_RS16855 0.52 +1.2 136,793 - ABZR87_RS16855 0.52 +0.3 137,087 + +1.0 137,087 + -0.8 137,087 + -0.9 137,087 + -0.6 137,088 - +1.0 137,088 - -1.2 137,088 - +1.2 137,096 + -0.5 137,097 - +0.3 137,244 + ABZR87_RS16860 0.44 +0.4 137,244 + ABZR87_RS16860 0.44 +0.6 137,245 - ABZR87_RS16860 0.45 +0.7 137,468 + +0.2 137,469 - -1.2 137,472 + -1.1 137,472 + +0.9 137,473 - -0.1 137,473 - -1.5 137,473 - -0.7 137,552 - +2.6 137,552 - -0.1 137,627 + ABZR87_RS16865 0.10 +1.3 137,627 + ABZR87_RS16865 0.10 -0.9 137,627 + ABZR87_RS16865 0.10 +1.7 137,627 + ABZR87_RS16865 0.10 -0.7 137,627 + ABZR87_RS16865 0.10 +0.5 137,676 + ABZR87_RS16865 0.14 -0.4 137,676 + ABZR87_RS16865 0.14 +1.2 137,676 + ABZR87_RS16865 0.14 +0.9 137,677 - ABZR87_RS16865 0.14 +0.5 137,677 - ABZR87_RS16865 0.14 +0.1 137,677 - ABZR87_RS16865 0.14 +0.5 137,717 - ABZR87_RS16865 0.17 -1.5 137,717 - ABZR87_RS16865 0.17 -0.5 137,831 + ABZR87_RS16865 0.25 +0.0 137,831 + ABZR87_RS16865 0.25 +0.5 137,831 + ABZR87_RS16865 0.25 +2.4 137,831 + ABZR87_RS16865 0.25 +0.4 137,831 + ABZR87_RS16865 0.25 +0.4 137,831 + ABZR87_RS16865 0.25 +0.0 137,831 + ABZR87_RS16865 0.25 -0.2 137,831 + ABZR87_RS16865 0.25 +0.7 137,831 + ABZR87_RS16865 0.25 +0.3 137,832 - ABZR87_RS16865 0.25 +0.3 137,832 - ABZR87_RS16865 0.25 +0.3 137,832 - ABZR87_RS16865 0.25 +0.1 137,832 - ABZR87_RS16865 0.25 +0.5 137,889 + ABZR87_RS16865 0.29 +0.2 137,889 + ABZR87_RS16865 0.29 -1.1 137,889 + ABZR87_RS16865 0.29 -1.6 137,890 - ABZR87_RS16865 0.29 -0.7 137,890 - ABZR87_RS16865 0.29 -0.0 137,890 - ABZR87_RS16865 0.29 -0.3 137,915 + ABZR87_RS16865 0.31 -0.5 137,916 - ABZR87_RS16865 0.31 -0.6 137,939 + ABZR87_RS16865 0.33 +0.9 137,940 - ABZR87_RS16865 0.33 -0.8 137,940 - ABZR87_RS16865 0.33 +2.0 138,023 - ABZR87_RS16865 0.39 +1.5 138,023 - ABZR87_RS16865 0.39 -0.3 138,091 + ABZR87_RS16865 0.44 -0.3 138,209 + ABZR87_RS16865 0.52 -0.2 138,209 + ABZR87_RS16865 0.52 +1.6 138,210 - ABZR87_RS16865 0.53 +0.8 138,230 + ABZR87_RS16865 0.54 -0.2 138,230 + ABZR87_RS16865 0.54 +0.2 138,230 + ABZR87_RS16865 0.54 -0.1 138,231 - ABZR87_RS16865 0.54 +0.8 138,231 - ABZR87_RS16865 0.54 +0.2 138,231 - ABZR87_RS16865 0.54 +0.6
Or see this region's nucleotide sequence