Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08250

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08235 and ABZR87_RS08240 overlap by 4 nucleotidesABZR87_RS08240 and ABZR87_RS08245 are separated by 16 nucleotidesABZR87_RS08245 and ABZR87_RS08250 are separated by 218 nucleotidesABZR87_RS08250 and ABZR87_RS08255 are separated by 14 nucleotidesABZR87_RS08255 and ABZR87_RS08260 overlap by 4 nucleotides ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255 _RS08235 ABZR87_RS08240: ABZR87_RS08240 - hypothetical protein, at 1,751,252 to 1,751,452 _RS08240 ABZR87_RS08245: ABZR87_RS08245 - hypothetical protein, at 1,751,469 to 1,751,810 _RS08245 ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492 _RS08250 ABZR87_RS08255: ABZR87_RS08255 - ABC-type transport auxiliary lipoprotein family protein, at 1,753,507 to 1,754,175 _RS08255 ABZR87_RS08260: ABZR87_RS08260 - intermembrane transport protein PqiB, at 1,754,172 to 1,755,815 _RS08260 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.656 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.703 kb on - strand, within ABZR87_RS08245at 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.839 kb on - strandat 1751.839 kb on - strandat 1751.922 kb on + strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.942 kb on - strandat 1752.072 kb on - strandat 1752.072 kb on - strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.093 kb on - strandat 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.329 kb on + strand, within ABZR87_RS08250at 1752.329 kb on + strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.400 kb on - strand, within ABZR87_RS08250at 1752.400 kb on - strand, within ABZR87_RS08250at 1752.428 kb on + strand, within ABZR87_RS08250at 1752.477 kb on - strand, within ABZR87_RS08250at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.652 kb on + strand, within ABZR87_RS08250at 1752.677 kb on + strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.919 kb on + strand, within ABZR87_RS08250at 1752.919 kb on + strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.920 kb on - strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.923 kb on + strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.924 kb on - strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.995 kb on + strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1752.996 kb on - strand, within ABZR87_RS08250at 1753.142 kb on - strand, within ABZR87_RS08250at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.778 kb on + strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.779 kb on - strand, within ABZR87_RS08255at 1753.805 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.956 kb on + strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1753.957 kb on - strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.067 kb on + strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.068 kb on - strand, within ABZR87_RS08255at 1754.228 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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1,751,654 + ABZR87_RS08245 0.54 -0.4
1,751,654 + ABZR87_RS08245 0.54 +0.6
1,751,655 - ABZR87_RS08245 0.54 +0.4
1,751,655 - ABZR87_RS08245 0.54 +0.6
1,751,655 - ABZR87_RS08245 0.54 +0.9
1,751,655 - ABZR87_RS08245 0.54 -1.1
1,751,656 + ABZR87_RS08245 0.55 +0.1
1,751,702 + ABZR87_RS08245 0.68 +1.1
1,751,702 + ABZR87_RS08245 0.68 -1.8
1,751,702 + ABZR87_RS08245 0.68 +0.9
1,751,702 + ABZR87_RS08245 0.68 -0.1
1,751,703 - ABZR87_RS08245 0.68 +1.3
1,751,838 + -1.8
1,751,838 + -0.8
1,751,838 + +1.0
1,751,838 + +0.1
1,751,839 - +1.1
1,751,839 - -0.4
1,751,922 + +0.4
1,751,923 - +1.4
1,751,923 - -1.0
1,751,923 - -1.3
1,751,942 - +0.4
1,752,072 - -0.4
1,752,072 - -0.2
1,752,092 + -0.9
1,752,092 + +0.2
1,752,092 + +0.3
1,752,092 + +0.1
1,752,093 - -1.0
1,752,198 + ABZR87_RS08250 0.12 +0.5
1,752,198 + ABZR87_RS08250 0.12 -1.3
1,752,198 + ABZR87_RS08250 0.12 +0.2
1,752,199 - ABZR87_RS08250 0.12 -0.8
1,752,199 - ABZR87_RS08250 0.12 +0.4
1,752,199 - ABZR87_RS08250 0.12 +0.9
1,752,329 + ABZR87_RS08250 0.20 -0.1
1,752,329 + ABZR87_RS08250 0.20 -0.9
1,752,330 - ABZR87_RS08250 0.21 -0.6
1,752,330 - ABZR87_RS08250 0.21 -1.1
1,752,330 - ABZR87_RS08250 0.21 +0.4
1,752,400 - ABZR87_RS08250 0.25 -0.5
1,752,400 - ABZR87_RS08250 0.25 +0.5
1,752,428 + ABZR87_RS08250 0.27 -0.3
1,752,477 - ABZR87_RS08250 0.31 +0.0
1,752,605 - ABZR87_RS08250 0.39 +0.8
1,752,605 - ABZR87_RS08250 0.39 -0.3
1,752,652 + ABZR87_RS08250 0.43 -0.4
1,752,677 + ABZR87_RS08250 0.44 +0.4
1,752,678 - ABZR87_RS08250 0.44 -0.2
1,752,678 - ABZR87_RS08250 0.44 -0.3
1,752,680 + ABZR87_RS08250 0.44 -0.6
1,752,680 + ABZR87_RS08250 0.44 +1.6
1,752,680 + ABZR87_RS08250 0.44 -0.9
1,752,681 - ABZR87_RS08250 0.45 +0.4
1,752,681 - ABZR87_RS08250 0.45 -0.4
1,752,681 - ABZR87_RS08250 0.45 -1.3
1,752,919 + ABZR87_RS08250 0.61 -0.2
1,752,919 + ABZR87_RS08250 0.61 -0.2
1,752,920 - ABZR87_RS08250 0.61 +0.1
1,752,920 - ABZR87_RS08250 0.61 +0.7
1,752,920 - ABZR87_RS08250 0.61 +0.3
1,752,920 - ABZR87_RS08250 0.61 -1.0
1,752,920 - ABZR87_RS08250 0.61 +0.3
1,752,920 - ABZR87_RS08250 0.61 -0.1
1,752,923 + ABZR87_RS08250 0.61 +0.4
1,752,923 + ABZR87_RS08250 0.61 -0.8
1,752,923 + ABZR87_RS08250 0.61 -0.5
1,752,923 + ABZR87_RS08250 0.61 -0.2
1,752,923 + ABZR87_RS08250 0.61 +0.1
1,752,923 + ABZR87_RS08250 0.61 +0.9
1,752,923 + ABZR87_RS08250 0.61 +2.3
1,752,923 + ABZR87_RS08250 0.61 -1.4
1,752,923 + ABZR87_RS08250 0.61 +0.6
1,752,923 + ABZR87_RS08250 0.61 +0.2
1,752,923 + ABZR87_RS08250 0.61 +0.1
1,752,923 + ABZR87_RS08250 0.61 +0.3
1,752,923 + ABZR87_RS08250 0.61 +0.4
1,752,923 + ABZR87_RS08250 0.61 -1.5
1,752,923 + ABZR87_RS08250 0.61 +0.1
1,752,923 + ABZR87_RS08250 0.61 -0.5
1,752,923 + ABZR87_RS08250 0.61 -0.1
1,752,923 + ABZR87_RS08250 0.61 -0.9
1,752,923 + ABZR87_RS08250 0.61 +1.0
1,752,924 - ABZR87_RS08250 0.61 -0.4
1,752,924 - ABZR87_RS08250 0.61 -0.4
1,752,924 - ABZR87_RS08250 0.61 +0.3
1,752,924 - ABZR87_RS08250 0.61 -0.5
1,752,924 - ABZR87_RS08250 0.61 -0.8
1,752,924 - ABZR87_RS08250 0.61 -0.9
1,752,995 + ABZR87_RS08250 0.66 -1.6
1,752,995 + ABZR87_RS08250 0.66 +2.2
1,752,995 + ABZR87_RS08250 0.66 +0.5
1,752,995 + ABZR87_RS08250 0.66 +0.1
1,752,995 + ABZR87_RS08250 0.66 +0.6
1,752,995 + ABZR87_RS08250 0.66 -0.7
1,752,995 + ABZR87_RS08250 0.66 -1.4
1,752,996 - ABZR87_RS08250 0.66 -0.4
1,752,996 - ABZR87_RS08250 0.66 +0.9
1,752,996 - ABZR87_RS08250 0.66 -0.3
1,752,996 - ABZR87_RS08250 0.66 +0.2
1,752,996 - ABZR87_RS08250 0.66 +1.8
1,752,996 - ABZR87_RS08250 0.66 -0.3
1,752,996 - ABZR87_RS08250 0.66 +0.4
1,753,142 - ABZR87_RS08250 0.76 -0.8
1,753,778 + ABZR87_RS08255 0.41 +0.2
1,753,778 + ABZR87_RS08255 0.41 -0.2
1,753,779 - ABZR87_RS08255 0.41 -0.8
1,753,779 - ABZR87_RS08255 0.41 -1.2
1,753,805 + ABZR87_RS08255 0.45 -0.2
1,753,956 + ABZR87_RS08255 0.67 +0.5
1,753,956 + ABZR87_RS08255 0.67 -0.3
1,753,957 - ABZR87_RS08255 0.67 -0.4
1,753,957 - ABZR87_RS08255 0.67 +1.1
1,753,957 - ABZR87_RS08255 0.67 +0.4
1,754,067 + ABZR87_RS08255 0.84 -1.6
1,754,067 + ABZR87_RS08255 0.84 -0.5
1,754,067 + ABZR87_RS08255 0.84 -0.4
1,754,067 + ABZR87_RS08255 0.84 +1.0
1,754,068 - ABZR87_RS08255 0.84 +0.5
1,754,068 - ABZR87_RS08255 0.84 -0.7
1,754,068 - ABZR87_RS08255 0.84 +0.6
1,754,068 - ABZR87_RS08255 0.84 +0.5
1,754,068 - ABZR87_RS08255 0.84 +0.6
1,754,068 - ABZR87_RS08255 0.84 -1.3
1,754,068 - ABZR87_RS08255 0.84 +0.1
1,754,068 - ABZR87_RS08255 0.84 -1.6
1,754,068 - ABZR87_RS08255 0.84 -0.6
1,754,228 - +1.3

Or see this region's nucleotide sequence