Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07655 and ABZR87_RS07660 are separated by 3 nucleotides ABZR87_RS07660 and ABZR87_RS07665 overlap by 4 nucleotides
ABZR87_RS07655: ABZR87_RS07655 - FAD-dependent oxidoreductase, at 1,621,311 to 1,622,594
_RS07655
ABZR87_RS07660: ABZR87_RS07660 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 1,622,598 to 1,623,833
_RS07660
ABZR87_RS07665: ABZR87_RS07665 - aminopeptidase P N-terminal domain-containing protein, at 1,623,830 to 1,625,218
_RS07665
Position (kb) 1622
1623
1624 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1621.709 kb on + strand, within ABZR87_RS07655 at 1621.732 kb on + strand, within ABZR87_RS07655 at 1621.749 kb on + strand, within ABZR87_RS07655 at 1621.749 kb on + strand, within ABZR87_RS07655 at 1621.750 kb on - strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.146 kb on + strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.147 kb on - strand, within ABZR87_RS07655 at 1622.179 kb on + strand, within ABZR87_RS07655 at 1622.180 kb on - strand, within ABZR87_RS07655 at 1622.180 kb on - strand, within ABZR87_RS07655 at 1622.180 kb on - strand, within ABZR87_RS07655 at 1622.180 kb on - strand, within ABZR87_RS07655 at 1622.321 kb on - strand, within ABZR87_RS07655 at 1623.954 kb on + strand at 1623.955 kb on - strand at 1623.955 kb on - strand at 1623.955 kb on - strand at 1623.955 kb on - strand at 1623.987 kb on + strand, within ABZR87_RS07665 at 1623.988 kb on - strand, within ABZR87_RS07665 at 1623.988 kb on - strand, within ABZR87_RS07665 at 1624.135 kb on - strand, within ABZR87_RS07665 at 1624.135 kb on - strand, within ABZR87_RS07665 at 1624.135 kb on - strand, within ABZR87_RS07665 at 1624.135 kb on - strand, within ABZR87_RS07665 at 1624.147 kb on - strand, within ABZR87_RS07665 at 1624.254 kb on - strand, within ABZR87_RS07665 at 1624.254 kb on - strand, within ABZR87_RS07665 at 1624.261 kb on - strand, within ABZR87_RS07665 at 1624.261 kb on - strand, within ABZR87_RS07665 at 1624.321 kb on - strand, within ABZR87_RS07665 at 1624.343 kb on - strand, within ABZR87_RS07665 at 1624.387 kb on - strand, within ABZR87_RS07665 at 1624.504 kb on - strand, within ABZR87_RS07665 at 1624.504 kb on - strand, within ABZR87_RS07665 at 1624.540 kb on - strand, within ABZR87_RS07665 at 1624.564 kb on - strand, within ABZR87_RS07665 at 1624.564 kb on - strand, within ABZR87_RS07665 at 1624.564 kb on - strand, within ABZR87_RS07665 at 1624.804 kb on - strand, within ABZR87_RS07665
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 1,621,709 + ABZR87_RS07655 0.31 +0.2 1,621,732 + ABZR87_RS07655 0.33 +0.4 1,621,749 + ABZR87_RS07655 0.34 +0.4 1,621,749 + ABZR87_RS07655 0.34 -1.2 1,621,750 - ABZR87_RS07655 0.34 -1.5 1,622,146 + ABZR87_RS07655 0.65 +0.4 1,622,146 + ABZR87_RS07655 0.65 -0.2 1,622,146 + ABZR87_RS07655 0.65 -0.5 1,622,146 + ABZR87_RS07655 0.65 +0.5 1,622,146 + ABZR87_RS07655 0.65 +0.4 1,622,146 + ABZR87_RS07655 0.65 +0.4 1,622,146 + ABZR87_RS07655 0.65 -1.1 1,622,146 + ABZR87_RS07655 0.65 +1.1 1,622,146 + ABZR87_RS07655 0.65 +1.5 1,622,146 + ABZR87_RS07655 0.65 +0.9 1,622,146 + ABZR87_RS07655 0.65 -0.0 1,622,146 + ABZR87_RS07655 0.65 +0.8 1,622,146 + ABZR87_RS07655 0.65 -0.8 1,622,146 + ABZR87_RS07655 0.65 +0.2 1,622,146 + ABZR87_RS07655 0.65 +0.7 1,622,147 - ABZR87_RS07655 0.65 +1.0 1,622,147 - ABZR87_RS07655 0.65 +1.0 1,622,147 - ABZR87_RS07655 0.65 -2.0 1,622,147 - ABZR87_RS07655 0.65 -0.9 1,622,147 - ABZR87_RS07655 0.65 -0.1 1,622,147 - ABZR87_RS07655 0.65 +0.9 1,622,179 + ABZR87_RS07655 0.68 -1.3 1,622,180 - ABZR87_RS07655 0.68 -2.1 1,622,180 - ABZR87_RS07655 0.68 -1.0 1,622,180 - ABZR87_RS07655 0.68 +0.8 1,622,180 - ABZR87_RS07655 0.68 -0.6 1,622,321 - ABZR87_RS07655 0.79 +1.2 1,623,954 + -0.4 1,623,955 - -2.2 1,623,955 - -0.7 1,623,955 - -1.0 1,623,955 - -2.7 1,623,987 + ABZR87_RS07665 0.11 +0.5 1,623,988 - ABZR87_RS07665 0.11 -0.5 1,623,988 - ABZR87_RS07665 0.11 -1.1 1,624,135 - ABZR87_RS07665 0.22 -1.5 1,624,135 - ABZR87_RS07665 0.22 -2.9 1,624,135 - ABZR87_RS07665 0.22 -1.5 1,624,135 - ABZR87_RS07665 0.22 +1.3 1,624,147 - ABZR87_RS07665 0.23 -2.5 1,624,254 - ABZR87_RS07665 0.31 -2.5 1,624,254 - ABZR87_RS07665 0.31 -2.6 1,624,261 - ABZR87_RS07665 0.31 -2.6 1,624,261 - ABZR87_RS07665 0.31 -3.6 1,624,321 - ABZR87_RS07665 0.35 -3.2 1,624,343 - ABZR87_RS07665 0.37 -2.0 1,624,387 - ABZR87_RS07665 0.40 -2.1 1,624,504 - ABZR87_RS07665 0.49 -1.8 1,624,504 - ABZR87_RS07665 0.49 -2.9 1,624,540 - ABZR87_RS07665 0.51 -3.2 1,624,564 - ABZR87_RS07665 0.53 -1.0 1,624,564 - ABZR87_RS07665 0.53 -1.8 1,624,564 - ABZR87_RS07665 0.53 -1.7 1,624,804 - ABZR87_RS07665 0.70 -0.5
Or see this region's nucleotide sequence