Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05310

Experiment: root EcoFAB sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	root EcoFAB sample 1; outgrowth in LB
1,116,795	+		ABZR87_RS05305	0.76	-2.9
1,116,809	+		ABZR87_RS05305	0.78	-3.1
1,116,809	+		ABZR87_RS05305	0.78	-1.3
1,116,809	+		ABZR87_RS05305	0.78	-2.2
1,116,809	+		ABZR87_RS05305	0.78	-3.7
1,116,809	+		ABZR87_RS05305	0.78	-1.7
1,116,810	-		ABZR87_RS05305	0.78	-2.7
1,116,810	-		ABZR87_RS05305	0.78	-1.7
1,116,810	-		ABZR87_RS05305	0.78	-1.1
1,116,810	-		ABZR87_RS05305	0.78	+0.3
1,116,810	-		ABZR87_RS05305	0.78	-2.0
1,116,810	-		ABZR87_RS05305	0.78	-1.6
1,116,810	-		ABZR87_RS05305	0.78	-0.1
1,116,810	-		ABZR87_RS05305	0.78	-2.7
1,116,810	-		ABZR87_RS05305	0.78	-3.5
1,116,810	-		ABZR87_RS05305	0.78	-1.0
1,116,810	-		ABZR87_RS05305	0.78	-2.3
1,116,810	-		ABZR87_RS05305	0.78	-3.5
1,116,810	-		ABZR87_RS05305	0.78	-2.6
1,116,810	-		ABZR87_RS05305	0.78	+0.5
1,116,881	+		ABZR87_RS05305	0.89	-0.7
1,116,881	+		ABZR87_RS05305	0.89	-2.5
1,116,881	+		ABZR87_RS05305	0.89	-2.6
1,116,881	+		ABZR87_RS05305	0.89	-3.0
1,116,881	+		ABZR87_RS05305	0.89	-3.2
1,116,881	+		ABZR87_RS05305	0.89	-3.3
1,116,882	-		ABZR87_RS05305	0.89	-1.0
1,116,882	-		ABZR87_RS05305	0.89	-2.7
1,116,882	-		ABZR87_RS05305	0.89	-3.0
1,116,882	-		ABZR87_RS05305	0.89	-1.9
1,116,882	-		ABZR87_RS05305	0.89	-0.5
1,116,882	-		ABZR87_RS05305	0.89	-3.8
1,116,915	+				-1.0
1,116,915	+				-1.5
1,116,915	+				-1.7
1,116,915	+				-0.2
1,116,916	-				-1.6
1,116,916	-				-2.4
1,116,916	-				-0.9
1,117,100	-				+0.3
1,117,134	+				-3.1
1,117,134	+				-4.3
1,117,134	+				+0.4
1,117,134	+				-1.9
1,117,135	-				-0.4
1,117,135	-				+1.8
1,117,135	-				+1.2
1,117,135	-				+0.2
1,117,135	-				-0.3
1,117,166	+				-0.7
1,117,186	+				-2.4
1,117,186	+				-3.8
1,117,186	+				+1.0
1,117,186	+				-3.6
1,117,186	+				-1.6
1,117,187	-				+0.2
1,117,187	-				-0.9
1,117,187	-				-0.8
1,117,187	-				-1.8
1,117,190	+				-3.2
1,117,190	+				-2.8
1,117,190	+				-3.4
1,117,190	+				-0.5
1,117,190	+				-2.3
1,117,190	+				-2.1
1,117,190	+				-1.8
1,117,190	+				-1.8
1,117,190	+				-1.7
1,117,190	+				-4.5
1,117,190	+				-2.0
1,117,190	+				-3.9
1,117,190	+				-2.6
1,117,190	+				-1.5
1,117,190	+				-3.3
1,117,190	+				-1.4
1,117,190	+				-2.3
1,117,191	-				+0.2
1,117,191	-				+0.4
1,117,191	-				-1.1
1,117,191	-				-1.8
1,117,191	-				+0.0
1,117,191	-				-0.0
1,117,191	-				+1.8
1,117,191	-				+0.5
1,117,191	-				+1.1
1,117,191	-				+0.2
1,117,191	-				+1.0
1,117,191	-				-0.6
1,117,191	-				+0.8
1,117,194	+				-2.8
1,117,194	+				+0.0
1,117,204	+				-1.7
1,117,204	+				-2.4
1,117,205	-				+0.2
1,117,205	-				+0.6
1,117,205	-				-0.8
1,117,205	-				-1.7
1,117,208	+				-2.8
1,117,208	+				-2.4
1,117,208	+				-2.5
1,117,208	+				-3.2
1,117,208	+				-3.2
1,117,208	+				-1.2
1,117,208	+				-1.1
1,117,208	+				-0.8
1,117,209	-				-3.1
1,117,209	-				-2.3
1,117,209	-				-0.7
1,117,209	-				-1.7
1,117,210	+				-2.1
1,117,210	+				-1.7
1,117,210	+				-1.9
1,117,210	+				-0.3
1,117,214	-				+0.4
1,117,244	+				-2.0
1,117,244	+				-1.3
1,117,245	-				-2.7
1,117,245	-				-0.4
1,117,339	+				-3.5
1,117,339	+				-2.8
1,117,339	+				-4.9
1,117,340	-				+0.5
1,117,405	+				-3.4
1,117,405	+				-3.7
1,117,405	+				-0.3
1,117,405	+				-3.2
1,117,406	-				+1.1
1,117,406	-				-0.1
1,117,406	-				-0.8
1,117,406	-				+0.2
1,117,406	-				+0.3
1,117,406	-				-1.0
1,117,522	+				+1.3
1,117,522	+				+0.3
1,117,522	+				+0.1
1,117,522	+				-1.3
1,117,522	+				-1.3
1,117,522	+				-0.1
1,117,522	+				-1.4
1,117,522	+				-1.1
1,117,522	+				+0.5
1,117,522	+				-1.0
1,117,522	+				+0.5
1,117,523	-				-0.7
1,117,523	-				-1.3
1,117,523	-				+0.7
1,117,523	-				-0.7
1,117,523	-				+1.0
1,117,523	-				+1.0
1,117,523	-				+0.3
1,117,523	-				-0.2
1,117,766	+		ABZR87_RS05310	0.19	-0.2
1,117,766	+		ABZR87_RS05310	0.19	-0.4
1,117,766	+		ABZR87_RS05310	0.19	-0.5
1,117,766	+		ABZR87_RS05310	0.19	-1.2
1,117,766	+		ABZR87_RS05310	0.19	-1.2
1,117,766	+		ABZR87_RS05310	0.19	-1.7
1,117,766	+		ABZR87_RS05310	0.19	-1.0
1,117,767	-		ABZR87_RS05310	0.19	-1.2
1,117,767	-		ABZR87_RS05310	0.19	-1.1
1,117,767	-		ABZR87_RS05310	0.19	+0.1
1,117,767	-		ABZR87_RS05310	0.19	+0.5
1,117,767	-		ABZR87_RS05310	0.19	-0.4
1,117,767	-		ABZR87_RS05310	0.19	-1.5
1,117,826	+		ABZR87_RS05310	0.24	+0.9
1,117,827	-		ABZR87_RS05310	0.24	-1.7
1,117,910	+		ABZR87_RS05310	0.30	-1.1
1,117,910	+		ABZR87_RS05310	0.30	-1.3
1,117,910	+		ABZR87_RS05310	0.30	-1.7
1,117,911	-		ABZR87_RS05310	0.31	-1.4
1,117,911	-		ABZR87_RS05310	0.31	-2.6
1,117,911	-		ABZR87_RS05310	0.31	-1.3
1,117,930	+		ABZR87_RS05310	0.32	-0.9
1,117,931	-		ABZR87_RS05310	0.32	-0.9
1,117,931	-		ABZR87_RS05310	0.32	-1.4
1,117,931	-		ABZR87_RS05310	0.32	-1.7
1,117,952	+		ABZR87_RS05310	0.34	-0.5
1,117,952	+		ABZR87_RS05310	0.34	-1.6
1,117,952	+		ABZR87_RS05310	0.34	-0.2
1,117,952	+		ABZR87_RS05310	0.34	-0.9
1,117,952	+		ABZR87_RS05310	0.34	+0.1
1,117,952	+		ABZR87_RS05310	0.34	-1.2
1,117,953	-		ABZR87_RS05310	0.34	-2.8
1,117,953	-		ABZR87_RS05310	0.34	-0.9
1,118,042	+		ABZR87_RS05310	0.41	-1.3
1,118,043	-		ABZR87_RS05310	0.41	-1.7
1,118,162	+		ABZR87_RS05310	0.50	-0.8
1,118,162	+		ABZR87_RS05310	0.50	-0.1
1,118,163	-		ABZR87_RS05310	0.50	-1.6
1,118,163	-		ABZR87_RS05310	0.50	+0.6
1,118,163	-		ABZR87_RS05310	0.50	+0.1
1,118,163	-		ABZR87_RS05310	0.50	-0.5
1,118,163	-		ABZR87_RS05310	0.50	-0.4
1,118,288	+		ABZR87_RS05310	0.60	-2.9
1,118,288	+		ABZR87_RS05310	0.60	-1.0
1,118,289	-		ABZR87_RS05310	0.60	-0.6
1,118,289	-		ABZR87_RS05310	0.60	-2.5
1,118,289	-		ABZR87_RS05310	0.60	-1.4
1,118,309	+		ABZR87_RS05310	0.62	-0.4
1,118,309	+		ABZR87_RS05310	0.62	+0.5
1,118,309	+		ABZR87_RS05310	0.62	-0.2
1,118,310	+		ABZR87_RS05310	0.62	-1.8
1,118,310	-		ABZR87_RS05310	0.62	-1.5
1,118,310	-		ABZR87_RS05310	0.62	+1.3
1,118,310	-		ABZR87_RS05310	0.62	+0.9
1,118,310	-		ABZR87_RS05310	0.62	-2.0
1,118,310	-		ABZR87_RS05310	0.62	+0.5
1,118,402	+		ABZR87_RS05310	0.69	-2.1
1,118,402	+		ABZR87_RS05310	0.69	-4.3
1,118,402	+		ABZR87_RS05310	0.69	-2.3
1,118,402	+		ABZR87_RS05310	0.69	-0.3
1,118,402	+		ABZR87_RS05310	0.69	-0.7
1,118,402	+		ABZR87_RS05310	0.69	-2.9
1,118,402	+		ABZR87_RS05310	0.69	-1.2
1,118,402	+		ABZR87_RS05310	0.69	-1.1
1,118,402	+		ABZR87_RS05310	0.69	-1.4
1,118,402	+		ABZR87_RS05310	0.69	-1.7
1,118,402	+		ABZR87_RS05310	0.69	-2.0
1,118,402	+		ABZR87_RS05310	0.69	-1.4
1,118,402	+		ABZR87_RS05310	0.69	-1.4
1,118,402	+		ABZR87_RS05310	0.69	-1.8
1,118,402	+		ABZR87_RS05310	0.69	-0.7
1,118,402	+		ABZR87_RS05310	0.69	-1.5
1,118,402	+		ABZR87_RS05310	0.69	-1.1
1,118,402	+		ABZR87_RS05310	0.69	-1.8
1,118,402	+		ABZR87_RS05310	0.69	-2.4
1,118,402	+		ABZR87_RS05310	0.69	-0.4
1,118,402	+		ABZR87_RS05310	0.69	-3.1
1,118,402	+		ABZR87_RS05310	0.69	-2.0
1,118,402	+		ABZR87_RS05310	0.69	-0.4
1,118,402	+		ABZR87_RS05310	0.69	+2.0
1,118,403	-		ABZR87_RS05310	0.69	-0.9
1,118,403	-		ABZR87_RS05310	0.69	-1.6
1,118,403	-		ABZR87_RS05310	0.69	+0.3
1,118,403	-		ABZR87_RS05310	0.69	-0.6
1,118,403	-		ABZR87_RS05310	0.69	-1.7
1,118,403	-		ABZR87_RS05310	0.69	-1.7
1,118,403	-		ABZR87_RS05310	0.69	-2.1
1,118,403	-		ABZR87_RS05310	0.69	+0.4
1,118,403	-		ABZR87_RS05310	0.69	+1.1
1,118,403	-		ABZR87_RS05310	0.69	+0.2
1,118,403	-		ABZR87_RS05310	0.69	+0.1
1,118,403	-		ABZR87_RS05310	0.69	-0.6
1,118,403	-		ABZR87_RS05310	0.69	-2.0
1,118,403	-		ABZR87_RS05310	0.69	+1.2
1,118,403	-		ABZR87_RS05310	0.69	-1.5
1,118,403	-		ABZR87_RS05310	0.69	-0.1
1,118,403	-		ABZR87_RS05310	0.69	-2.3
1,118,403	-		ABZR87_RS05310	0.69	-1.3
1,118,403	-		ABZR87_RS05310	0.69	-0.6
1,118,403	-		ABZR87_RS05310	0.69	-0.8
1,118,403	-		ABZR87_RS05310	0.69	+0.1
1,118,403	-		ABZR87_RS05310	0.69	-2.0
1,118,403	-		ABZR87_RS05310	0.69	-0.9
1,118,403	-		ABZR87_RS05310	0.69	-1.6
1,118,713	+				-3.1
1,118,792	+				-4.4
1,118,793	-				-1.5
1,118,793	-				+0.4
1,118,954	+				+1.1
1,118,955	-				-0.6
1,118,955	-				+0.5
1,119,038	+				-1.4
1,119,038	+				-0.8
1,119,038	+				+0.8
1,119,038	+				+0.2
1,119,038	+				-0.7
1,119,038	+				-1.6
1,119,038	+				-2.0
1,119,038	+				-1.7
1,119,038	+				-0.6
1,119,038	+				-0.8
1,119,038	+				-0.3
1,119,038	+				-0.5
1,119,038	+				-1.9
1,119,038	+				-1.8
1,119,038	+				-0.9
1,119,038	+				-1.4
1,119,039	-				-1.2
1,119,039	-				-0.6
1,119,039	-				-0.9
1,119,039	-				-3.1
1,119,039	-				-2.6
1,119,039	-				+0.0
1,119,039	-				-0.1
1,119,039	-				-2.3
1,119,039	-				-1.1
1,119,039	-				+0.6
1,119,039	-				-2.6
1,119,039	-				+0.7
1,119,039	-				-0.9
1,119,040	+				-2.5
1,119,040	+				+0.0
1,119,040	+				+0.0
1,119,040	+				+4.3
1,119,040	+				-0.6
1,119,041	-				-0.3
1,119,041	-				+0.3
1,119,041	-				+1.1
1,119,041	-				-0.9
1,119,281	+		ABZR87_RS05315	0.15	-2.0
1,119,281	+		ABZR87_RS05315	0.15	-0.7
1,119,281	+		ABZR87_RS05315	0.15	+0.5
1,119,281	+		ABZR87_RS05315	0.15	+1.2
1,119,282	-		ABZR87_RS05315	0.15	-0.5
1,119,282	-		ABZR87_RS05315	0.15	+0.4
1,119,282	-		ABZR87_RS05315	0.15	-1.2
1,119,282	-		ABZR87_RS05315	0.15	-0.9
1,119,398	+		ABZR87_RS05315	0.19	-1.1
1,119,422	+		ABZR87_RS05315	0.19	+0.6
1,119,422	+		ABZR87_RS05315	0.19	-0.1
1,119,423	-		ABZR87_RS05315	0.19	-2.7
1,119,423	-		ABZR87_RS05315	0.19	-0.6
1,119,423	-		ABZR87_RS05315	0.19	-1.6
1,119,423	-		ABZR87_RS05315	0.19	-1.0
1,119,635	+		ABZR87_RS05315	0.26	-0.8
1,119,636	-		ABZR87_RS05315	0.26	-0.6
1,119,636	-		ABZR87_RS05315	0.26	-0.8
1,119,758	+		ABZR87_RS05315	0.30	-1.4
1,119,758	+		ABZR87_RS05315	0.30	+0.7
1,119,758	+		ABZR87_RS05315	0.30	+0.5
1,119,759	-		ABZR87_RS05315	0.30	-1.1
1,119,779	+		ABZR87_RS05315	0.31	-1.2
1,119,779	+		ABZR87_RS05315	0.31	-2.9
1,119,779	+		ABZR87_RS05315	0.31	-1.0
1,119,779	+		ABZR87_RS05315	0.31	-0.5
1,119,779	+		ABZR87_RS05315	0.31	+0.1
1,119,779	+		ABZR87_RS05315	0.31	-0.5
1,119,779	+		ABZR87_RS05315	0.31	-0.2
1,119,779	+		ABZR87_RS05315	0.31	+0.0
1,119,780	-		ABZR87_RS05315	0.31	-1.4
1,119,780	-		ABZR87_RS05315	0.31	-0.3
1,119,780	-		ABZR87_RS05315	0.31	-2.9
1,119,780	-		ABZR87_RS05315	0.31	-2.4
1,119,780	-		ABZR87_RS05315	0.31	-0.8
1,119,791	+		ABZR87_RS05315	0.31	+0.0
1,119,791	+		ABZR87_RS05315	0.31	-0.3