Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04570 and ABZR87_RS04575 are separated by 17 nucleotides ABZR87_RS04575 and ABZR87_RS04580 are separated by 147 nucleotides ABZR87_RS04580 and ABZR87_RS04585 overlap by 23 nucleotides
ABZR87_RS04570: ABZR87_RS04570 - porin, at 956,051 to 957,178
_RS04570
ABZR87_RS04575: ABZR87_RS04575 - ABC transporter substrate-binding protein, at 957,196 to 958,245
_RS04575
ABZR87_RS04580: ABZR87_RS04580 - response regulator, at 958,393 to 959,073
_RS04580
ABZR87_RS04585: ABZR87_RS04585 - sensor histidine kinase, at 959,051 to 960,526
_RS04585
Position (kb) 957
958
959 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 956.291 kb on + strand, within ABZR87_RS04570 at 956.395 kb on + strand, within ABZR87_RS04570 at 956.396 kb on - strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.447 kb on + strand, within ABZR87_RS04570 at 956.448 kb on - strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.459 kb on + strand, within ABZR87_RS04570 at 956.460 kb on - strand, within ABZR87_RS04570 at 956.496 kb on - strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.531 kb on + strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.532 kb on - strand, within ABZR87_RS04570 at 956.540 kb on - strand, within ABZR87_RS04570 at 956.619 kb on - strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.681 kb on + strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.682 kb on - strand, within ABZR87_RS04570 at 956.753 kb on + strand, within ABZR87_RS04570 at 956.754 kb on - strand, within ABZR87_RS04570 at 956.805 kb on - strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.861 kb on + strand, within ABZR87_RS04570 at 956.862 kb on - strand, within ABZR87_RS04570 at 956.904 kb on - strand, within ABZR87_RS04570 at 956.975 kb on + strand, within ABZR87_RS04570 at 956.975 kb on + strand, within ABZR87_RS04570 at 956.976 kb on - strand, within ABZR87_RS04570 at 956.976 kb on - strand, within ABZR87_RS04570 at 957.030 kb on - strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.044 kb on + strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.045 kb on - strand, within ABZR87_RS04570 at 957.072 kb on - strand at 957.072 kb on - strand at 957.086 kb on + strand at 957.086 kb on + strand at 957.087 kb on - strand at 957.087 kb on - strand at 957.087 kb on - strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.107 kb on + strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.108 kb on - strand at 957.176 kb on + strand at 957.176 kb on + strand at 957.177 kb on - strand at 957.177 kb on - strand at 957.197 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.234 kb on + strand at 957.235 kb on - strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.236 kb on + strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.237 kb on - strand at 957.378 kb on - strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.452 kb on + strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.453 kb on - strand, within ABZR87_RS04575 at 957.530 kb on + strand, within ABZR87_RS04575 at 957.531 kb on - strand, within ABZR87_RS04575 at 957.531 kb on - strand, within ABZR87_RS04575 at 957.725 kb on + strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.726 kb on - strand, within ABZR87_RS04575 at 957.761 kb on + strand, within ABZR87_RS04575 at 957.762 kb on - strand, within ABZR87_RS04575 at 957.895 kb on + strand, within ABZR87_RS04575 at 957.950 kb on + strand, within ABZR87_RS04575 at 957.950 kb on + strand, within ABZR87_RS04575 at 957.951 kb on - strand, within ABZR87_RS04575 at 957.961 kb on + strand, within ABZR87_RS04575 at 957.961 kb on + strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 957.962 kb on - strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.088 kb on + strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.089 kb on - strand, within ABZR87_RS04575 at 958.233 kb on + strand at 958.233 kb on + strand at 958.234 kb on - strand at 958.234 kb on - strand at 958.268 kb on + strand at 958.268 kb on + strand at 958.268 kb on + strand at 958.268 kb on + strand at 958.268 kb on + strand at 958.268 kb on + strand at 958.269 kb on - strand at 958.273 kb on - strand at 958.322 kb on - strand at 958.322 kb on - strand at 958.340 kb on + strand at 958.340 kb on + strand at 958.340 kb on + strand at 958.341 kb on - strand at 958.341 kb on - strand at 958.341 kb on - strand at 958.341 kb on - strand at 958.341 kb on - strand at 958.525 kb on + strand, within ABZR87_RS04580 at 958.525 kb on + strand, within ABZR87_RS04580 at 958.526 kb on - strand, within ABZR87_RS04580 at 958.526 kb on - strand, within ABZR87_RS04580 at 958.526 kb on - strand, within ABZR87_RS04580 at 958.526 kb on - strand, within ABZR87_RS04580 at 958.526 kb on - strand, within ABZR87_RS04580 at 958.577 kb on + strand, within ABZR87_RS04580 at 958.578 kb on - strand, within ABZR87_RS04580 at 958.578 kb on - strand, within ABZR87_RS04580 at 958.684 kb on + strand, within ABZR87_RS04580 at 958.685 kb on - strand, within ABZR87_RS04580 at 958.685 kb on - strand, within ABZR87_RS04580 at 958.792 kb on + strand, within ABZR87_RS04580 at 958.792 kb on + strand, within ABZR87_RS04580 at 958.792 kb on + strand, within ABZR87_RS04580 at 958.792 kb on + strand, within ABZR87_RS04580 at 958.793 kb on - strand, within ABZR87_RS04580 at 958.969 kb on + strand, within ABZR87_RS04580 at 958.969 kb on + strand, within ABZR87_RS04580 at 958.969 kb on + strand, within ABZR87_RS04580 at 958.970 kb on - strand, within ABZR87_RS04580 at 958.970 kb on - strand, within ABZR87_RS04580 at 958.970 kb on - strand, within ABZR87_RS04580 at 959.038 kb on + strand at 959.038 kb on + strand at 959.038 kb on + strand at 959.038 kb on + strand at 959.039 kb on - strand at 959.039 kb on - strand at 959.039 kb on - strand at 959.039 kb on - strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.165 kb on + strand at 959.166 kb on - strand at 959.166 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 956,291 + ABZR87_RS04570 0.21 +0.2 956,395 + ABZR87_RS04570 0.30 -1.5 956,396 - ABZR87_RS04570 0.31 +0.2 956,447 + ABZR87_RS04570 0.35 -1.1 956,447 + ABZR87_RS04570 0.35 -1.8 956,448 - ABZR87_RS04570 0.35 +0.8 956,459 + ABZR87_RS04570 0.36 +0.9 956,459 + ABZR87_RS04570 0.36 +0.9 956,460 - ABZR87_RS04570 0.36 -0.3 956,496 - ABZR87_RS04570 0.39 +0.0 956,531 + ABZR87_RS04570 0.43 -0.8 956,531 + ABZR87_RS04570 0.43 -0.2 956,532 - ABZR87_RS04570 0.43 -2.3 956,532 - ABZR87_RS04570 0.43 -1.5 956,540 - ABZR87_RS04570 0.43 -0.2 956,619 - ABZR87_RS04570 0.50 -0.2 956,681 + ABZR87_RS04570 0.56 -0.9 956,681 + ABZR87_RS04570 0.56 -1.1 956,681 + ABZR87_RS04570 0.56 +0.4 956,682 - ABZR87_RS04570 0.56 -0.2 956,682 - ABZR87_RS04570 0.56 +0.6 956,682 - ABZR87_RS04570 0.56 +0.5 956,682 - ABZR87_RS04570 0.56 -1.3 956,682 - ABZR87_RS04570 0.56 +0.5 956,753 + ABZR87_RS04570 0.62 +1.1 956,754 - ABZR87_RS04570 0.62 -0.7 956,805 - ABZR87_RS04570 0.67 +0.1 956,861 + ABZR87_RS04570 0.72 -0.5 956,861 + ABZR87_RS04570 0.72 -0.5 956,861 + ABZR87_RS04570 0.72 +0.1 956,862 - ABZR87_RS04570 0.72 +0.2 956,904 - ABZR87_RS04570 0.76 -0.6 956,975 + ABZR87_RS04570 0.82 -0.4 956,975 + ABZR87_RS04570 0.82 +1.8 956,976 - ABZR87_RS04570 0.82 +1.0 956,976 - ABZR87_RS04570 0.82 -2.9 957,030 - ABZR87_RS04570 0.87 -1.6 957,044 + ABZR87_RS04570 0.88 -0.0 957,044 + ABZR87_RS04570 0.88 -0.2 957,044 + ABZR87_RS04570 0.88 +0.6 957,044 + ABZR87_RS04570 0.88 -0.4 957,045 - ABZR87_RS04570 0.88 -1.4 957,045 - ABZR87_RS04570 0.88 -0.0 957,045 - ABZR87_RS04570 0.88 -0.6 957,072 - -0.8 957,072 - -0.3 957,086 + +0.0 957,086 + -0.2 957,087 - -1.3 957,087 - -0.3 957,087 - +0.7 957,107 + -1.1 957,107 + -0.1 957,107 + +0.4 957,107 + -0.0 957,107 + +0.2 957,108 - -1.6 957,108 - -0.5 957,108 - -0.0 957,108 - -1.2 957,108 - +0.5 957,108 - -0.2 957,176 + -0.3 957,176 + -0.3 957,177 - +1.0 957,177 - +0.2 957,197 + +3.1 957,234 + +0.3 957,234 + +0.4 957,234 + +0.4 957,234 + +2.8 957,235 - +0.6 957,236 + +0.1 957,236 + -0.2 957,236 + -0.1 957,236 + +1.6 957,237 - +0.3 957,237 - -0.1 957,237 - -0.2 957,237 - -2.0 957,237 - -0.6 957,237 - +0.3 957,237 - -0.5 957,378 - ABZR87_RS04575 0.17 -0.1 957,452 + ABZR87_RS04575 0.24 +0.6 957,452 + ABZR87_RS04575 0.24 -1.3 957,452 + ABZR87_RS04575 0.24 -0.6 957,452 + ABZR87_RS04575 0.24 +1.4 957,452 + ABZR87_RS04575 0.24 +0.6 957,452 + ABZR87_RS04575 0.24 -0.4 957,453 - ABZR87_RS04575 0.24 +0.3 957,453 - ABZR87_RS04575 0.24 +9.1 957,453 - ABZR87_RS04575 0.24 +0.2 957,453 - ABZR87_RS04575 0.24 -0.0 957,453 - ABZR87_RS04575 0.24 +1.0 957,453 - ABZR87_RS04575 0.24 -0.9 957,453 - ABZR87_RS04575 0.24 +0.8 957,453 - ABZR87_RS04575 0.24 +2.3 957,530 + ABZR87_RS04575 0.32 -1.4 957,531 - ABZR87_RS04575 0.32 +0.9 957,531 - ABZR87_RS04575 0.32 +1.4 957,725 + ABZR87_RS04575 0.50 -2.6 957,726 - ABZR87_RS04575 0.50 +0.9 957,726 - ABZR87_RS04575 0.50 +1.1 957,726 - ABZR87_RS04575 0.50 +0.0 957,726 - ABZR87_RS04575 0.50 -0.2 957,726 - ABZR87_RS04575 0.50 -0.8 957,761 + ABZR87_RS04575 0.54 +0.5 957,762 - ABZR87_RS04575 0.54 +0.5 957,895 + ABZR87_RS04575 0.67 -1.0 957,950 + ABZR87_RS04575 0.72 -0.2 957,950 + ABZR87_RS04575 0.72 +0.2 957,951 - ABZR87_RS04575 0.72 -1.0 957,961 + ABZR87_RS04575 0.73 +0.9 957,961 + ABZR87_RS04575 0.73 +1.0 957,962 - ABZR87_RS04575 0.73 -0.9 957,962 - ABZR87_RS04575 0.73 -0.0 957,962 - ABZR87_RS04575 0.73 +1.4 957,962 - ABZR87_RS04575 0.73 -1.7 957,962 - ABZR87_RS04575 0.73 +0.1 958,088 + ABZR87_RS04575 0.85 -0.4 958,088 + ABZR87_RS04575 0.85 -0.6 958,088 + ABZR87_RS04575 0.85 +0.5 958,089 - ABZR87_RS04575 0.85 +1.1 958,089 - ABZR87_RS04575 0.85 -1.1 958,089 - ABZR87_RS04575 0.85 +0.0 958,089 - ABZR87_RS04575 0.85 -0.5 958,089 - ABZR87_RS04575 0.85 -0.1 958,233 + +0.6 958,233 + +1.6 958,234 - -1.4 958,234 - +0.4 958,268 + -0.9 958,268 + +0.1 958,268 + +0.4 958,268 + +0.8 958,268 + +0.1 958,268 + +0.3 958,269 - +1.0 958,273 - +0.1 958,322 - -0.5 958,322 - -1.5 958,340 + -0.2 958,340 + -0.7 958,340 + +0.6 958,341 - -0.2 958,341 - -0.7 958,341 - +1.0 958,341 - +0.2 958,341 - -1.4 958,525 + ABZR87_RS04580 0.19 -0.2 958,525 + ABZR87_RS04580 0.19 -1.1 958,526 - ABZR87_RS04580 0.20 -2.0 958,526 - ABZR87_RS04580 0.20 +0.2 958,526 - ABZR87_RS04580 0.20 -0.2 958,526 - ABZR87_RS04580 0.20 -1.0 958,526 - ABZR87_RS04580 0.20 -2.2 958,577 + ABZR87_RS04580 0.27 -0.9 958,578 - ABZR87_RS04580 0.27 +0.3 958,578 - ABZR87_RS04580 0.27 -2.3 958,684 + ABZR87_RS04580 0.43 +0.7 958,685 - ABZR87_RS04580 0.43 +0.5 958,685 - ABZR87_RS04580 0.43 -0.9 958,792 + ABZR87_RS04580 0.59 +1.1 958,792 + ABZR87_RS04580 0.59 -0.9 958,792 + ABZR87_RS04580 0.59 -0.5 958,792 + ABZR87_RS04580 0.59 +0.5 958,793 - ABZR87_RS04580 0.59 +1.4 958,969 + ABZR87_RS04580 0.85 +0.6 958,969 + ABZR87_RS04580 0.85 +0.5 958,969 + ABZR87_RS04580 0.85 +0.6 958,970 - ABZR87_RS04580 0.85 +0.3 958,970 - ABZR87_RS04580 0.85 +0.2 958,970 - ABZR87_RS04580 0.85 +0.9 959,038 + +1.0 959,038 + -0.1 959,038 + +1.3 959,038 + +2.6 959,039 - -0.5 959,039 - -0.3 959,039 - -0.7 959,039 - -0.4 959,165 + +0.8 959,165 + +0.9 959,165 + +0.5 959,165 + -0.1 959,165 + +1.1 959,165 + +1.3 959,165 + -0.6 959,165 + -0.6 959,166 - +0.1 959,166 - -1.3
Or see this region's nucleotide sequence