Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04480 and ABZR87_RS04485 are separated by 84 nucleotides ABZR87_RS04485 and ABZR87_RS04490 overlap by 4 nucleotides ABZR87_RS04490 and ABZR87_RS04495 are separated by 381 nucleotides
ABZR87_RS04480: ABZR87_RS04480 - hypothetical protein, at 935,794 to 936,276
_RS04480
ABZR87_RS04485: ABZR87_RS04485 - hypothetical protein, at 936,361 to 937,152
_RS04485
ABZR87_RS04490: ABZR87_RS04490 - hypothetical protein, at 937,149 to 937,637
_RS04490
ABZR87_RS04495: ABZR87_RS04495 - TorF family putative porin, at 938,019 to 938,816
_RS04495
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.362 kb on + strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.363 kb on - strand at 935.364 kb on + strand at 935.364 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.529 kb on + strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.530 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.972 kb on + strand, within ABZR87_RS04480 at 935.972 kb on + strand, within ABZR87_RS04480 at 935.973 kb on - strand, within ABZR87_RS04480 at 935.973 kb on - strand, within ABZR87_RS04480 at 936.116 kb on + strand, within ABZR87_RS04480 at 936.116 kb on + strand, within ABZR87_RS04480 at 936.117 kb on - strand, within ABZR87_RS04480 at 936.151 kb on + strand, within ABZR87_RS04480 at 936.152 kb on - strand, within ABZR87_RS04480 at 936.152 kb on - strand, within ABZR87_RS04480 at 936.152 kb on - strand, within ABZR87_RS04480 at 936.201 kb on + strand, within ABZR87_RS04480 at 936.202 kb on - strand, within ABZR87_RS04480 at 936.225 kb on + strand, within ABZR87_RS04480 at 936.226 kb on - strand, within ABZR87_RS04480 at 936.226 kb on - strand, within ABZR87_RS04480 at 936.226 kb on - strand, within ABZR87_RS04480 at 936.258 kb on + strand at 936.258 kb on + strand at 936.259 kb on - strand at 936.274 kb on + strand at 936.274 kb on + strand at 936.274 kb on + strand at 936.274 kb on + strand at 936.275 kb on - strand at 936.275 kb on - strand at 936.275 kb on - strand at 936.284 kb on - strand at 936.308 kb on + strand at 936.308 kb on + strand at 936.308 kb on + strand at 936.309 kb on - strand at 936.330 kb on + strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.337 kb on + strand at 936.337 kb on + strand at 936.384 kb on + strand at 936.398 kb on - strand at 936.427 kb on + strand at 936.428 kb on - strand at 936.443 kb on - strand, within ABZR87_RS04485 at 936.443 kb on - strand, within ABZR87_RS04485 at 936.478 kb on + strand, within ABZR87_RS04485 at 936.479 kb on - strand, within ABZR87_RS04485 at 936.479 kb on - strand, within ABZR87_RS04485 at 936.482 kb on + strand, within ABZR87_RS04485 at 936.482 kb on + strand, within ABZR87_RS04485 at 936.482 kb on + strand, within ABZR87_RS04485 at 936.482 kb on + strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.483 kb on - strand, within ABZR87_RS04485 at 936.488 kb on - strand, within ABZR87_RS04485 at 936.488 kb on - strand, within ABZR87_RS04485 at 936.531 kb on + strand, within ABZR87_RS04485 at 936.532 kb on - strand, within ABZR87_RS04485 at 936.532 kb on - strand, within ABZR87_RS04485 at 936.536 kb on - strand, within ABZR87_RS04485 at 936.536 kb on - strand, within ABZR87_RS04485 at 936.601 kb on + strand, within ABZR87_RS04485 at 936.601 kb on + strand, within ABZR87_RS04485 at 936.607 kb on + strand, within ABZR87_RS04485 at 936.608 kb on - strand, within ABZR87_RS04485 at 936.608 kb on - strand, within ABZR87_RS04485 at 936.608 kb on - strand, within ABZR87_RS04485 at 936.650 kb on - strand, within ABZR87_RS04485 at 936.749 kb on - strand, within ABZR87_RS04485 at 936.758 kb on - strand, within ABZR87_RS04485 at 936.774 kb on + strand, within ABZR87_RS04485 at 936.774 kb on + strand, within ABZR87_RS04485 at 936.776 kb on + strand, within ABZR87_RS04485 at 936.776 kb on + strand, within ABZR87_RS04485 at 936.776 kb on + strand, within ABZR87_RS04485 at 936.777 kb on - strand, within ABZR87_RS04485 at 936.777 kb on - strand, within ABZR87_RS04485 at 936.785 kb on + strand, within ABZR87_RS04485 at 936.785 kb on + strand, within ABZR87_RS04485 at 936.786 kb on - strand, within ABZR87_RS04485 at 936.917 kb on + strand, within ABZR87_RS04485 at 936.918 kb on - strand, within ABZR87_RS04485 at 936.918 kb on - strand, within ABZR87_RS04485 at 936.918 kb on - strand, within ABZR87_RS04485 at 936.951 kb on + strand, within ABZR87_RS04485 at 936.951 kb on + strand, within ABZR87_RS04485 at 936.951 kb on + strand, within ABZR87_RS04485 at 936.951 kb on + strand, within ABZR87_RS04485 at 936.952 kb on - strand, within ABZR87_RS04485 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.100 kb on - strand at 937.100 kb on - strand at 937.105 kb on + strand at 937.105 kb on + strand at 937.106 kb on - strand at 937.108 kb on + strand at 937.108 kb on + strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.121 kb on + strand at 937.144 kb on + strand at 937.144 kb on + strand at 937.145 kb on - strand at 937.203 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.344 kb on - strand, within ABZR87_RS04490 at 937.383 kb on + strand, within ABZR87_RS04490 at 937.547 kb on + strand, within ABZR87_RS04490 at 937.564 kb on - strand, within ABZR87_RS04490 at 937.567 kb on + strand, within ABZR87_RS04490 at 937.580 kb on + strand, within ABZR87_RS04490 at 937.581 kb on - strand, within ABZR87_RS04490 at 937.581 kb on - strand, within ABZR87_RS04490 at 937.729 kb on + strand at 937.730 kb on - strand at 937.732 kb on + strand at 937.732 kb on + strand at 937.732 kb on + strand at 937.733 kb on - strand at 937.733 kb on - strand at 937.733 kb on - strand at 937.771 kb on + strand at 937.771 kb on + strand at 937.772 kb on - strand at 937.844 kb on + strand at 937.855 kb on + strand at 937.876 kb on + strand at 937.888 kb on - strand at 937.890 kb on - strand at 937.902 kb on - strand at 937.902 kb on - strand at 937.902 kb on - strand at 937.998 kb on - strand at 937.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 935,362 + +3.0 935,362 + -0.3 935,362 + -0.9 935,362 + +0.1 935,362 + +1.1 935,363 - -0.9 935,363 - +0.1 935,363 - +1.4 935,363 - +0.0 935,364 + -0.4 935,364 + +0.1 935,529 + -0.4 935,529 + -0.4 935,529 + +0.0 935,529 + -2.2 935,529 + +0.7 935,530 - -0.3 935,530 - +1.0 935,530 - +0.5 935,530 - +0.8 935,530 - +0.2 935,780 - -0.3 935,780 - -0.3 935,972 + ABZR87_RS04480 0.37 -0.2 935,972 + ABZR87_RS04480 0.37 -0.9 935,973 - ABZR87_RS04480 0.37 -1.8 935,973 - ABZR87_RS04480 0.37 +1.1 936,116 + ABZR87_RS04480 0.67 +0.0 936,116 + ABZR87_RS04480 0.67 +0.5 936,117 - ABZR87_RS04480 0.67 +0.3 936,151 + ABZR87_RS04480 0.74 -1.8 936,152 - ABZR87_RS04480 0.74 -0.5 936,152 - ABZR87_RS04480 0.74 +1.0 936,152 - ABZR87_RS04480 0.74 -1.1 936,201 + ABZR87_RS04480 0.84 +0.0 936,202 - ABZR87_RS04480 0.84 +0.1 936,225 + ABZR87_RS04480 0.89 +1.3 936,226 - ABZR87_RS04480 0.89 -0.7 936,226 - ABZR87_RS04480 0.89 -0.3 936,226 - ABZR87_RS04480 0.89 +0.1 936,258 + +0.2 936,258 + +0.1 936,259 - +0.1 936,274 + +2.4 936,274 + +0.3 936,274 + +0.5 936,274 + -0.9 936,275 - -0.4 936,275 - +0.1 936,275 - +0.8 936,284 - -0.1 936,308 + +1.8 936,308 + -0.8 936,308 + -0.3 936,309 - -1.0 936,330 + +1.3 936,336 - +0.9 936,336 - -0.3 936,337 + +0.8 936,337 + -0.2 936,384 + +0.6 936,398 - +0.1 936,427 + -0.2 936,428 - +0.8 936,443 - ABZR87_RS04485 0.10 +0.3 936,443 - ABZR87_RS04485 0.10 +0.0 936,478 + ABZR87_RS04485 0.15 +0.1 936,479 - ABZR87_RS04485 0.15 +0.9 936,479 - ABZR87_RS04485 0.15 +0.5 936,482 + ABZR87_RS04485 0.15 -1.9 936,482 + ABZR87_RS04485 0.15 -0.6 936,482 + ABZR87_RS04485 0.15 -0.0 936,482 + ABZR87_RS04485 0.15 -1.7 936,483 - ABZR87_RS04485 0.15 +0.2 936,483 - ABZR87_RS04485 0.15 -0.1 936,483 - ABZR87_RS04485 0.15 -0.2 936,483 - ABZR87_RS04485 0.15 +1.0 936,483 - ABZR87_RS04485 0.15 -1.0 936,483 - ABZR87_RS04485 0.15 +1.5 936,483 - ABZR87_RS04485 0.15 +0.5 936,483 - ABZR87_RS04485 0.15 +0.1 936,488 - ABZR87_RS04485 0.16 -2.9 936,488 - ABZR87_RS04485 0.16 -0.1 936,531 + ABZR87_RS04485 0.21 -0.2 936,532 - ABZR87_RS04485 0.22 +1.4 936,532 - ABZR87_RS04485 0.22 +0.2 936,536 - ABZR87_RS04485 0.22 -0.1 936,536 - ABZR87_RS04485 0.22 +1.0 936,601 + ABZR87_RS04485 0.30 +0.8 936,601 + ABZR87_RS04485 0.30 +0.3 936,607 + ABZR87_RS04485 0.31 -1.5 936,608 - ABZR87_RS04485 0.31 -0.0 936,608 - ABZR87_RS04485 0.31 +0.4 936,608 - ABZR87_RS04485 0.31 +1.3 936,650 - ABZR87_RS04485 0.36 +0.4 936,749 - ABZR87_RS04485 0.49 +0.2 936,758 - ABZR87_RS04485 0.50 +0.7 936,774 + ABZR87_RS04485 0.52 +2.1 936,774 + ABZR87_RS04485 0.52 -0.9 936,776 + ABZR87_RS04485 0.52 -0.1 936,776 + ABZR87_RS04485 0.52 +0.3 936,776 + ABZR87_RS04485 0.52 +0.1 936,777 - ABZR87_RS04485 0.53 +1.8 936,777 - ABZR87_RS04485 0.53 -0.1 936,785 + ABZR87_RS04485 0.54 +0.5 936,785 + ABZR87_RS04485 0.54 -0.0 936,786 - ABZR87_RS04485 0.54 -0.7 936,917 + ABZR87_RS04485 0.70 +0.1 936,918 - ABZR87_RS04485 0.70 +0.2 936,918 - ABZR87_RS04485 0.70 +1.1 936,918 - ABZR87_RS04485 0.70 +1.2 936,951 + ABZR87_RS04485 0.74 +0.2 936,951 + ABZR87_RS04485 0.74 -0.8 936,951 + ABZR87_RS04485 0.74 -0.6 936,951 + ABZR87_RS04485 0.74 -0.6 936,952 - ABZR87_RS04485 0.75 +1.2 937,064 + ABZR87_RS04485 0.89 -0.2 937,064 + ABZR87_RS04485 0.89 +0.3 937,064 + ABZR87_RS04485 0.89 +0.4 937,100 - -0.5 937,100 - +1.2 937,105 + -0.6 937,105 + -0.9 937,106 - +0.2 937,108 + -0.6 937,108 + +2.3 937,109 - +3.4 937,109 - -0.7 937,109 - +0.6 937,109 - +0.8 937,109 - -0.1 937,109 - -1.0 937,109 - -0.3 937,109 - -0.8 937,109 - -1.0 937,121 + -0.3 937,144 + -0.9 937,144 + +0.6 937,145 - +0.5 937,203 - ABZR87_RS04490 0.11 -0.3 937,287 - ABZR87_RS04490 0.28 -0.6 937,287 - ABZR87_RS04490 0.28 +1.0 937,287 - ABZR87_RS04490 0.28 -0.6 937,344 - ABZR87_RS04490 0.40 +1.1 937,383 + ABZR87_RS04490 0.48 -2.1 937,547 + ABZR87_RS04490 0.81 -0.4 937,564 - ABZR87_RS04490 0.85 -0.6 937,567 + ABZR87_RS04490 0.85 -0.2 937,580 + ABZR87_RS04490 0.88 +0.4 937,581 - ABZR87_RS04490 0.88 +0.1 937,581 - ABZR87_RS04490 0.88 -0.6 937,729 + +1.5 937,730 - +0.1 937,732 + -0.5 937,732 + +0.7 937,732 + +0.2 937,733 - +1.1 937,733 - -0.1 937,733 - +1.3 937,771 + +0.6 937,771 + -0.4 937,772 - +1.2 937,844 + -0.5 937,855 + -0.3 937,876 + +0.7 937,888 - -2.8 937,890 - +0.0 937,902 - +1.1 937,902 - +1.5 937,902 - -0.8 937,998 - +0.1 937,998 - +2.4
Or see this region's nucleotide sequence