Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04225

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04220 and ABZR87_RS04225 are separated by 68 nucleotidesABZR87_RS04225 and ABZR87_RS04230 are separated by 75 nucleotidesABZR87_RS04230 and ABZR87_RS04235 overlap by 4 nucleotides ABZR87_RS04220: ABZR87_RS04220 - choline dehydrogenase, at 881,542 to 883,176 _RS04220 ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114 _RS04225 ABZR87_RS04230: ABZR87_RS04230 - Cu(I)-responsive transcriptional regulator, at 884,190 to 884,648 _RS04230 ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867 _RS04235 Position (kb) 883 884 885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 882.455 kb on + strand, within ABZR87_RS04220at 882.455 kb on + strand, within ABZR87_RS04220at 882.455 kb on + strand, within ABZR87_RS04220at 882.456 kb on - strand, within ABZR87_RS04220at 882.476 kb on + strand, within ABZR87_RS04220at 882.477 kb on - strand, within ABZR87_RS04220at 882.477 kb on - strand, within ABZR87_RS04220at 882.869 kb on + strand, within ABZR87_RS04220at 882.870 kb on - strand, within ABZR87_RS04220at 882.870 kb on - strand, within ABZR87_RS04220at 882.893 kb on + strand, within ABZR87_RS04220at 882.893 kb on + strand, within ABZR87_RS04220at 882.893 kb on + strand, within ABZR87_RS04220at 882.893 kb on + strand, within ABZR87_RS04220at 882.893 kb on + strand, within ABZR87_RS04220at 882.894 kb on - strand, within ABZR87_RS04220at 882.894 kb on - strand, within ABZR87_RS04220at 882.894 kb on - strand, within ABZR87_RS04220at 882.894 kb on - strand, within ABZR87_RS04220at 882.894 kb on - strand, within ABZR87_RS04220at 883.022 kb on + strandat 883.022 kb on + strandat 883.022 kb on + strandat 883.022 kb on + strandat 883.023 kb on - strandat 883.023 kb on - strandat 883.023 kb on - strandat 883.023 kb on - strandat 883.028 kb on + strandat 883.056 kb on - strandat 883.160 kb on + strandat 883.160 kb on + strandat 883.160 kb on + strandat 883.160 kb on + strandat 883.160 kb on + strandat 883.161 kb on - strandat 883.161 kb on - strandat 883.161 kb on - strandat 883.161 kb on - strandat 883.161 kb on - strandat 883.161 kb on - strandat 883.166 kb on + strandat 883.166 kb on + strandat 883.167 kb on - strandat 883.167 kb on - strandat 883.167 kb on - strandat 883.170 kb on + strandat 883.170 kb on + strandat 883.170 kb on + strandat 883.170 kb on + strandat 883.170 kb on + strandat 883.170 kb on + strandat 883.171 kb on - strandat 883.171 kb on - strandat 883.171 kb on - strandat 883.171 kb on - strandat 883.171 kb on - strandat 883.203 kb on + strandat 883.203 kb on + strandat 883.378 kb on + strand, within ABZR87_RS04225at 883.378 kb on + strand, within ABZR87_RS04225at 883.379 kb on - strand, within ABZR87_RS04225at 883.381 kb on - strand, within ABZR87_RS04225at 883.827 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 884.149 kb on + strandat 884.150 kb on - strandat 884.150 kb on - strandat 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.561 kb on - strand, within ABZR87_RS04230at 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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882,455 + ABZR87_RS04220 0.56 +0.1
882,455 + ABZR87_RS04220 0.56 -0.6
882,455 + ABZR87_RS04220 0.56 +0.8
882,456 - ABZR87_RS04220 0.56 -1.4
882,476 + ABZR87_RS04220 0.57 +0.4
882,477 - ABZR87_RS04220 0.57 -1.3
882,477 - ABZR87_RS04220 0.57 -0.7
882,869 + ABZR87_RS04220 0.81 -0.0
882,870 - ABZR87_RS04220 0.81 -0.7
882,870 - ABZR87_RS04220 0.81 -1.0
882,893 + ABZR87_RS04220 0.83 -1.3
882,893 + ABZR87_RS04220 0.83 -0.8
882,893 + ABZR87_RS04220 0.83 +0.4
882,893 + ABZR87_RS04220 0.83 -0.7
882,893 + ABZR87_RS04220 0.83 -0.5
882,894 - ABZR87_RS04220 0.83 -0.9
882,894 - ABZR87_RS04220 0.83 -0.3
882,894 - ABZR87_RS04220 0.83 -0.3
882,894 - ABZR87_RS04220 0.83 -0.5
882,894 - ABZR87_RS04220 0.83 +1.3
883,022 + +0.1
883,022 + -0.2
883,022 + -0.5
883,022 + -0.2
883,023 - +1.2
883,023 - +0.4
883,023 - -1.1
883,023 - +0.3
883,028 + +0.4
883,056 - -2.0
883,160 + -0.6
883,160 + -0.2
883,160 + +0.5
883,160 + -0.5
883,160 + -1.9
883,161 - -1.2
883,161 - -0.4
883,161 - +2.5
883,161 - +0.5
883,161 - +0.3
883,161 - -1.3
883,166 + -0.3
883,166 + +0.5
883,167 - +0.1
883,167 - +0.6
883,167 - +1.3
883,170 + -2.5
883,170 + +1.6
883,170 + +0.9
883,170 + -0.3
883,170 + -1.4
883,170 + -0.5
883,171 - +2.1
883,171 - -1.3
883,171 - +2.7
883,171 - -1.4
883,171 - -2.0
883,203 + -0.1
883,203 + -0.7
883,378 + ABZR87_RS04225 0.15 -1.9
883,378 + ABZR87_RS04225 0.15 -1.3
883,379 - ABZR87_RS04225 0.15 +0.5
883,381 - ABZR87_RS04225 0.16 +2.3
883,827 + ABZR87_RS04225 0.67 -1.1
883,831 + ABZR87_RS04225 0.67 -2.0
883,831 + ABZR87_RS04225 0.67 +0.5
883,831 + ABZR87_RS04225 0.67 -0.4
883,831 + ABZR87_RS04225 0.67 -0.1
883,831 + ABZR87_RS04225 0.67 +0.9
883,832 - ABZR87_RS04225 0.67 +1.2
883,832 - ABZR87_RS04225 0.67 -0.3
883,832 - ABZR87_RS04225 0.67 -1.5
883,832 - ABZR87_RS04225 0.67 -0.6
883,832 - ABZR87_RS04225 0.67 -0.6
884,149 + -1.4
884,150 - +0.0
884,150 - +0.0
884,500 + ABZR87_RS04230 0.68 -0.5
884,500 + ABZR87_RS04230 0.68 -0.8
884,500 + ABZR87_RS04230 0.68 +1.1
884,500 + ABZR87_RS04230 0.68 +0.3
884,501 - ABZR87_RS04230 0.68 -1.9
884,501 - ABZR87_RS04230 0.68 -0.7
884,501 - ABZR87_RS04230 0.68 +0.1
884,509 + ABZR87_RS04230 0.69 +0.3
884,509 + ABZR87_RS04230 0.69 -0.8
884,509 + ABZR87_RS04230 0.69 -0.5
884,509 + ABZR87_RS04230 0.69 +0.1
884,509 + ABZR87_RS04230 0.69 -1.0
884,510 - ABZR87_RS04230 0.70 +1.5
884,510 - ABZR87_RS04230 0.70 +0.2
884,557 + ABZR87_RS04230 0.80 +2.2
884,557 + ABZR87_RS04230 0.80 +0.5
884,557 + ABZR87_RS04230 0.80 +0.2
884,557 + ABZR87_RS04230 0.80 +2.2
884,558 - ABZR87_RS04230 0.80 +1.1
884,558 - ABZR87_RS04230 0.80 -0.4
884,560 + ABZR87_RS04230 0.81 +0.0
884,560 + ABZR87_RS04230 0.81 +0.3
884,561 - ABZR87_RS04230 0.81 +0.2
884,787 + +0.0
884,787 + +0.2
884,787 + -2.9
884,787 + -1.2
884,787 + -0.4
884,787 + +0.4
884,787 + -2.7
884,787 + -4.0
884,787 + -2.4
884,787 + -0.2
884,787 + -1.1
884,788 - -0.8
884,788 - +0.2
884,788 - -4.0
884,788 - -1.0
884,788 - -1.7
884,788 - -0.0

Or see this region's nucleotide sequence