Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04175

Experiment: root EcoFAB sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS04165 and ABZR87_RS04170 overlap by 15 nucleotidesABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotidesABZR87_RS04175 and ABZR87_RS04180 overlap by 11 nucleotidesABZR87_RS04180 and ABZR87_RS04185 are separated by 22 nucleotides ABZR87_RS04165: ABZR87_RS04165 - SDR family oxidoreductase, at 872,576 to 873,544 _RS04165 ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081 _RS04170 ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628 _RS04175 ABZR87_RS04180: ABZR87_RS04180 - TSUP family transporter, at 874,618 to 875,376 _RS04180 ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836 _RS04185 Position (kb) 874 875Strain fitness (log2 ratio) -2 -1 0 1 2at 873.263 kb on + strand, within ABZR87_RS04165at 873.264 kb on - strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.422 kb on + strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.423 kb on - strand, within ABZR87_RS04165at 873.532 kb on - strandat 873.532 kb on - strandat 873.532 kb on - strandat 873.717 kb on - strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.117 kb on - strandat 874.158 kb on + strandat 874.159 kb on - strandat 874.216 kb on + strandat 874.217 kb on - strandat 874.217 kb on - strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.271 kb on - strandat 874.271 kb on - strandat 874.305 kb on + strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.637 kb on + strandat 874.637 kb on + strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.871 kb on + strand, within ABZR87_RS04180at 874.937 kb on + strand, within ABZR87_RS04180at 874.938 kb on - strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.098 kb on - strand, within ABZR87_RS04180at 875.171 kb on + strand, within ABZR87_RS04180at 875.172 kb on - strand, within ABZR87_RS04180at 875.273 kb on + strand, within ABZR87_RS04180at 875.400 kb on + strandat 875.400 kb on + strandat 875.522 kb on + strand, within ABZR87_RS04185at 875.522 kb on + strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.541 kb on + strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
remove
873,263 + ABZR87_RS04165 0.71 +1.7
873,264 - ABZR87_RS04165 0.71 -0.5
873,422 + ABZR87_RS04165 0.87 -1.2
873,422 + ABZR87_RS04165 0.87 -0.3
873,423 - ABZR87_RS04165 0.87 -0.8
873,423 - ABZR87_RS04165 0.87 -0.8
873,532 - -0.3
873,532 - -1.8
873,532 - -0.9
873,717 - ABZR87_RS04170 0.34 +0.0
873,741 + ABZR87_RS04170 0.38 +1.3
873,741 + ABZR87_RS04170 0.38 +1.3
873,741 + ABZR87_RS04170 0.38 -0.0
873,742 - ABZR87_RS04170 0.38 +0.2
873,742 - ABZR87_RS04170 0.38 -2.5
873,744 + ABZR87_RS04170 0.39 +0.4
873,744 + ABZR87_RS04170 0.39 -1.2
873,745 - ABZR87_RS04170 0.39 -0.8
873,745 - ABZR87_RS04170 0.39 -0.5
873,849 + ABZR87_RS04170 0.58 -0.5
873,849 + ABZR87_RS04170 0.58 -2.1
873,849 + ABZR87_RS04170 0.58 +0.2
873,849 + ABZR87_RS04170 0.58 -0.1
873,850 - ABZR87_RS04170 0.58 +0.3
873,850 - ABZR87_RS04170 0.58 -0.2
873,850 - ABZR87_RS04170 0.58 -1.1
874,024 - ABZR87_RS04170 0.89 +1.2
874,024 - ABZR87_RS04170 0.89 +1.4
874,117 - +0.8
874,158 + +0.7
874,159 - -0.4
874,216 + -0.1
874,217 - -0.4
874,217 - -0.8
874,270 + +0.3
874,270 + +0.2
874,270 + +1.2
874,270 + +0.1
874,271 - -1.0
874,271 - -0.6
874,305 + ABZR87_RS04175 0.14 -0.4
874,306 - ABZR87_RS04175 0.15 -0.2
874,306 - ABZR87_RS04175 0.15 +1.0
874,306 - ABZR87_RS04175 0.15 +0.1
874,306 - ABZR87_RS04175 0.15 +0.8
874,306 - ABZR87_RS04175 0.15 -0.3
874,344 + ABZR87_RS04175 0.25 +0.4
874,344 + ABZR87_RS04175 0.25 +1.3
874,344 + ABZR87_RS04175 0.25 -0.2
874,344 + ABZR87_RS04175 0.25 -0.0
874,344 + ABZR87_RS04175 0.25 +0.4
874,344 + ABZR87_RS04175 0.25 +0.2
874,344 + ABZR87_RS04175 0.25 -0.8
874,344 + ABZR87_RS04175 0.25 +1.5
874,344 + ABZR87_RS04175 0.25 -0.5
874,345 - ABZR87_RS04175 0.25 -0.8
874,345 - ABZR87_RS04175 0.25 -0.0
874,345 - ABZR87_RS04175 0.25 +0.9
874,345 - ABZR87_RS04175 0.25 +1.6
874,345 - ABZR87_RS04175 0.25 -0.7
874,345 - ABZR87_RS04175 0.25 +2.1
874,345 - ABZR87_RS04175 0.25 -0.3
874,423 - ABZR87_RS04175 0.46 -1.3
874,423 - ABZR87_RS04175 0.46 +1.7
874,637 + -0.6
874,637 + +1.1
874,638 - -0.1
874,638 - -0.4
874,638 - +0.8
874,871 + ABZR87_RS04180 0.33 +0.3
874,937 + ABZR87_RS04180 0.42 -2.0
874,938 - ABZR87_RS04180 0.42 -0.4
875,097 + ABZR87_RS04180 0.63 -1.6
875,097 + ABZR87_RS04180 0.63 +0.1
875,097 + ABZR87_RS04180 0.63 -2.1
875,098 - ABZR87_RS04180 0.63 +0.2
875,171 + ABZR87_RS04180 0.73 -1.0
875,172 - ABZR87_RS04180 0.73 +0.4
875,273 + ABZR87_RS04180 0.86 -1.4
875,400 + +1.2
875,400 + -1.8
875,522 + ABZR87_RS04185 0.28 -0.9
875,522 + ABZR87_RS04185 0.28 -0.5
875,523 - ABZR87_RS04185 0.28 +0.8
875,523 - ABZR87_RS04185 0.28 +0.8
875,523 - ABZR87_RS04185 0.28 +1.2
875,523 - ABZR87_RS04185 0.28 +0.4
875,541 + ABZR87_RS04185 0.32 -0.0
875,542 - ABZR87_RS04185 0.33 -2.0
875,542 - ABZR87_RS04185 0.33 -0.3

Or see this region's nucleotide sequence