Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03455 and ABZR87_RS03460 are separated by 22 nucleotides ABZR87_RS03460 and ABZR87_RS03465 are separated by 575 nucleotides
ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038
_RS03455
ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272
_RS03460
ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531
_RS03465
Position (kb) 723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.213 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.317 kb on - strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.551 kb on + strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.552 kb on - strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.671 kb on + strand, within ABZR87_RS03455 at 722.839 kb on - strand, within ABZR87_RS03455 at 722.859 kb on + strand, within ABZR87_RS03455 at 722.859 kb on + strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 722.860 kb on - strand, within ABZR87_RS03455 at 723.036 kb on + strand at 723.036 kb on + strand at 723.036 kb on + strand at 723.036 kb on + strand at 723.037 kb on - strand at 723.055 kb on + strand at 723.055 kb on + strand at 723.056 kb on - strand at 723.056 kb on - strand at 723.076 kb on + strand at 723.352 kb on + strand, within ABZR87_RS03460 at 723.352 kb on + strand, within ABZR87_RS03460 at 723.352 kb on + strand, within ABZR87_RS03460 at 723.353 kb on - strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.451 kb on + strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.452 kb on - strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.520 kb on + strand, within ABZR87_RS03460 at 723.521 kb on - strand, within ABZR87_RS03460 at 723.572 kb on - strand, within ABZR87_RS03460 at 723.625 kb on + strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.626 kb on - strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.650 kb on + strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.651 kb on - strand, within ABZR87_RS03460 at 723.797 kb on + strand, within ABZR87_RS03460 at 723.798 kb on - strand, within ABZR87_RS03460 at 723.798 kb on - strand, within ABZR87_RS03460 at 723.860 kb on - strand, within ABZR87_RS03460 at 724.246 kb on - strand at 724.254 kb on + strand at 724.255 kb on - strand at 724.255 kb on - strand at 724.255 kb on - strand at 724.596 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.907 kb on - strand at 724.907 kb on - strand at 724.907 kb on - strand at 724.907 kb on - strand at 725.141 kb on + strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.147 kb on + strand, within ABZR87_RS03465 at 725.148 kb on - strand, within ABZR87_RS03465 at 725.197 kb on + strand, within ABZR87_RS03465 at 725.197 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.216 kb on - strand, within ABZR87_RS03465
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 722,113 + ABZR87_RS03455 0.41 -1.6 722,113 + ABZR87_RS03455 0.41 -0.1 722,213 + ABZR87_RS03455 0.47 +2.4 722,316 + ABZR87_RS03455 0.54 +0.5 722,316 + ABZR87_RS03455 0.54 +0.4 722,316 + ABZR87_RS03455 0.54 -1.5 722,317 - ABZR87_RS03455 0.54 -2.0 722,382 + ABZR87_RS03455 0.58 -1.0 722,382 + ABZR87_RS03455 0.58 -0.7 722,383 - ABZR87_RS03455 0.58 -2.9 722,383 - ABZR87_RS03455 0.58 -0.8 722,383 - ABZR87_RS03455 0.58 -0.6 722,383 - ABZR87_RS03455 0.58 -1.8 722,383 - ABZR87_RS03455 0.58 -2.1 722,551 + ABZR87_RS03455 0.69 -1.2 722,551 + ABZR87_RS03455 0.69 -1.5 722,551 + ABZR87_RS03455 0.69 +0.9 722,551 + ABZR87_RS03455 0.69 -2.7 722,551 + ABZR87_RS03455 0.69 -1.1 722,552 - ABZR87_RS03455 0.69 -0.9 722,552 - ABZR87_RS03455 0.69 -2.4 722,552 - ABZR87_RS03455 0.69 -1.4 722,552 - ABZR87_RS03455 0.69 -0.2 722,671 + ABZR87_RS03455 0.76 -1.7 722,671 + ABZR87_RS03455 0.76 -4.2 722,671 + ABZR87_RS03455 0.76 -0.8 722,671 + ABZR87_RS03455 0.76 -0.6 722,839 - ABZR87_RS03455 0.87 -0.8 722,859 + ABZR87_RS03455 0.88 -2.4 722,859 + ABZR87_RS03455 0.88 -0.7 722,860 - ABZR87_RS03455 0.89 -0.6 722,860 - ABZR87_RS03455 0.89 -1.5 722,860 - ABZR87_RS03455 0.89 -2.6 723,036 + +0.2 723,036 + +0.9 723,036 + -2.2 723,036 + +0.0 723,037 - +0.2 723,055 + +0.0 723,055 + +0.4 723,056 - +0.7 723,056 - -1.1 723,076 + -0.8 723,352 + ABZR87_RS03460 0.24 -2.2 723,352 + ABZR87_RS03460 0.24 +0.6 723,352 + ABZR87_RS03460 0.24 -0.9 723,353 - ABZR87_RS03460 0.24 -1.2 723,451 + ABZR87_RS03460 0.32 -2.3 723,451 + ABZR87_RS03460 0.32 -3.2 723,451 + ABZR87_RS03460 0.32 -2.6 723,451 + ABZR87_RS03460 0.32 -0.3 723,452 - ABZR87_RS03460 0.32 -1.3 723,452 - ABZR87_RS03460 0.32 -1.8 723,452 - ABZR87_RS03460 0.32 -1.9 723,452 - ABZR87_RS03460 0.32 -2.6 723,520 + ABZR87_RS03460 0.38 -2.3 723,520 + ABZR87_RS03460 0.38 -1.5 723,520 + ABZR87_RS03460 0.38 -1.6 723,520 + ABZR87_RS03460 0.38 -2.0 723,520 + ABZR87_RS03460 0.38 -0.9 723,520 + ABZR87_RS03460 0.38 -2.2 723,521 - ABZR87_RS03460 0.38 -1.1 723,572 - ABZR87_RS03460 0.42 -0.9 723,625 + ABZR87_RS03460 0.47 -2.0 723,626 - ABZR87_RS03460 0.47 -1.8 723,626 - ABZR87_RS03460 0.47 -2.4 723,626 - ABZR87_RS03460 0.47 -2.3 723,626 - ABZR87_RS03460 0.47 -1.9 723,626 - ABZR87_RS03460 0.47 -0.8 723,650 + ABZR87_RS03460 0.49 -0.3 723,650 + ABZR87_RS03460 0.49 -1.0 723,650 + ABZR87_RS03460 0.49 +2.9 723,651 - ABZR87_RS03460 0.49 -1.0 723,651 - ABZR87_RS03460 0.49 -3.5 723,651 - ABZR87_RS03460 0.49 -1.4 723,651 - ABZR87_RS03460 0.49 -1.8 723,651 - ABZR87_RS03460 0.49 -0.9 723,651 - ABZR87_RS03460 0.49 -1.9 723,797 + ABZR87_RS03460 0.61 -1.2 723,798 - ABZR87_RS03460 0.61 -4.0 723,798 - ABZR87_RS03460 0.61 -0.3 723,860 - ABZR87_RS03460 0.66 +0.2 724,246 - -2.2 724,254 + -1.7 724,255 - -0.2 724,255 - -2.6 724,255 - +0.3 724,596 + -0.8 724,906 + -1.3 724,906 + +0.3 724,906 + -1.3 724,906 + -1.0 724,907 - +1.7 724,907 - -0.2 724,907 - -0.3 724,907 - -0.4 725,141 + ABZR87_RS03465 0.43 +0.5 725,142 - ABZR87_RS03465 0.43 -1.0 725,142 - ABZR87_RS03465 0.43 -1.0 725,142 - ABZR87_RS03465 0.43 +0.1 725,147 + ABZR87_RS03465 0.44 -1.4 725,148 - ABZR87_RS03465 0.44 +0.0 725,197 + ABZR87_RS03465 0.51 +1.2 725,197 + ABZR87_RS03465 0.51 +0.2 725,215 + ABZR87_RS03465 0.54 -0.8 725,215 + ABZR87_RS03465 0.54 -0.4 725,215 + ABZR87_RS03465 0.54 +1.0 725,216 - ABZR87_RS03465 0.54 -1.0
Or see this region's nucleotide sequence