Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03290 and ABZR87_RS03295 overlap by 4 nucleotides ABZR87_RS03295 and ABZR87_RS03300 are separated by 9 nucleotides ABZR87_RS03300 and ABZR87_RS03305 are separated by 162 nucleotides
ABZR87_RS03290: ABZR87_RS03290 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 692,597 to 694,795
_RS03290
ABZR87_RS03295: ABZR87_RS03295 - xanthine dehydrogenase family protein subunit M, at 694,792 to 695,814
_RS03295
ABZR87_RS03300: ABZR87_RS03300 - 2Fe-2S iron-sulfur cluster-binding protein, at 695,824 to 696,564
_RS03300
ABZR87_RS03305: ABZR87_RS03305 - M20/M25/M40 family metallo-hydrolase, at 696,727 to 698,037
_RS03305
Position (kb) 694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.828 kb on + strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.829 kb on - strand, within ABZR87_RS03290 at 693.958 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.176 kb on + strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.177 kb on - strand, within ABZR87_RS03290 at 694.191 kb on + strand, within ABZR87_RS03290 at 694.191 kb on + strand, within ABZR87_RS03290 at 694.191 kb on + strand, within ABZR87_RS03290 at 694.191 kb on + strand, within ABZR87_RS03290 at 694.192 kb on - strand, within ABZR87_RS03290 at 694.192 kb on - strand, within ABZR87_RS03290 at 694.192 kb on - strand, within ABZR87_RS03290 at 694.267 kb on + strand, within ABZR87_RS03290 at 694.268 kb on - strand, within ABZR87_RS03290 at 694.272 kb on + strand, within ABZR87_RS03290 at 694.273 kb on - strand, within ABZR87_RS03290 at 694.273 kb on - strand, within ABZR87_RS03290 at 694.424 kb on + strand, within ABZR87_RS03290 at 694.424 kb on + strand, within ABZR87_RS03290 at 694.500 kb on + strand, within ABZR87_RS03290 at 694.500 kb on + strand, within ABZR87_RS03290 at 694.500 kb on + strand, within ABZR87_RS03290 at 694.500 kb on + strand, within ABZR87_RS03290 at 694.500 kb on + strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.501 kb on - strand, within ABZR87_RS03290 at 694.689 kb on - strand at 694.689 kb on - strand at 694.729 kb on - strand at 695.105 kb on + strand, within ABZR87_RS03295 at 695.106 kb on - strand, within ABZR87_RS03295 at 695.106 kb on - strand, within ABZR87_RS03295 at 695.106 kb on - strand, within ABZR87_RS03295 at 695.106 kb on - strand, within ABZR87_RS03295 at 695.106 kb on - strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.132 kb on + strand, within ABZR87_RS03295 at 695.133 kb on - strand, within ABZR87_RS03295 at 695.133 kb on - strand, within ABZR87_RS03295 at 695.133 kb on - strand, within ABZR87_RS03295 at 695.206 kb on - strand, within ABZR87_RS03295 at 695.206 kb on - strand, within ABZR87_RS03295 at 695.439 kb on - strand, within ABZR87_RS03295 at 695.450 kb on + strand, within ABZR87_RS03295 at 695.450 kb on + strand, within ABZR87_RS03295 at 695.450 kb on + strand, within ABZR87_RS03295 at 695.451 kb on - strand, within ABZR87_RS03295 at 695.456 kb on + strand, within ABZR87_RS03295 at 695.456 kb on + strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.457 kb on - strand, within ABZR87_RS03295 at 695.556 kb on - strand, within ABZR87_RS03295 at 695.692 kb on + strand, within ABZR87_RS03295 at 695.692 kb on + strand, within ABZR87_RS03295 at 695.693 kb on - strand, within ABZR87_RS03295 at 695.693 kb on - strand, within ABZR87_RS03295 at 695.693 kb on - strand, within ABZR87_RS03295 at 695.693 kb on - strand, within ABZR87_RS03295 at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.739 kb on - strand at 695.739 kb on - strand at 695.798 kb on + strand at 695.798 kb on + strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.882 kb on + strand at 696.016 kb on + strand, within ABZR87_RS03300 at 696.017 kb on - strand, within ABZR87_RS03300 at 696.053 kb on + strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.593 kb on + strand at 696.593 kb on + strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.629 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.699 kb on - strand at 696.705 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.729 kb on - strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.786 kb on - strand at 696.786 kb on - strand at 696.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 693,828 + ABZR87_RS03290 0.56 +0.8 693,829 - ABZR87_RS03290 0.56 +1.4 693,829 - ABZR87_RS03290 0.56 -0.6 693,829 - ABZR87_RS03290 0.56 +1.5 693,829 - ABZR87_RS03290 0.56 +0.3 693,829 - ABZR87_RS03290 0.56 +1.6 693,829 - ABZR87_RS03290 0.56 +0.5 693,958 + ABZR87_RS03290 0.62 +0.8 694,176 + ABZR87_RS03290 0.72 -1.3 694,176 + ABZR87_RS03290 0.72 -0.3 694,176 + ABZR87_RS03290 0.72 -0.5 694,176 + ABZR87_RS03290 0.72 -0.1 694,176 + ABZR87_RS03290 0.72 -0.5 694,176 + ABZR87_RS03290 0.72 -1.4 694,176 + ABZR87_RS03290 0.72 +0.3 694,176 + ABZR87_RS03290 0.72 -0.8 694,176 + ABZR87_RS03290 0.72 +0.0 694,177 - ABZR87_RS03290 0.72 +0.8 694,177 - ABZR87_RS03290 0.72 -0.4 694,177 - ABZR87_RS03290 0.72 -2.4 694,177 - ABZR87_RS03290 0.72 -0.1 694,177 - ABZR87_RS03290 0.72 +0.2 694,177 - ABZR87_RS03290 0.72 -1.3 694,177 - ABZR87_RS03290 0.72 +0.1 694,191 + ABZR87_RS03290 0.72 -1.1 694,191 + ABZR87_RS03290 0.72 +1.5 694,191 + ABZR87_RS03290 0.72 -0.6 694,191 + ABZR87_RS03290 0.72 -0.1 694,192 - ABZR87_RS03290 0.73 -2.0 694,192 - ABZR87_RS03290 0.73 +1.2 694,192 - ABZR87_RS03290 0.73 +0.1 694,267 + ABZR87_RS03290 0.76 +0.5 694,268 - ABZR87_RS03290 0.76 +1.4 694,272 + ABZR87_RS03290 0.76 -0.2 694,273 - ABZR87_RS03290 0.76 -0.8 694,273 - ABZR87_RS03290 0.76 +0.1 694,424 + ABZR87_RS03290 0.83 +0.7 694,424 + ABZR87_RS03290 0.83 -0.0 694,500 + ABZR87_RS03290 0.87 -0.4 694,500 + ABZR87_RS03290 0.87 +0.2 694,500 + ABZR87_RS03290 0.87 -0.6 694,500 + ABZR87_RS03290 0.87 -0.3 694,500 + ABZR87_RS03290 0.87 +0.0 694,501 - ABZR87_RS03290 0.87 -1.1 694,501 - ABZR87_RS03290 0.87 -0.1 694,501 - ABZR87_RS03290 0.87 +0.7 694,501 - ABZR87_RS03290 0.87 +0.3 694,501 - ABZR87_RS03290 0.87 -0.8 694,501 - ABZR87_RS03290 0.87 +0.2 694,501 - ABZR87_RS03290 0.87 +0.3 694,501 - ABZR87_RS03290 0.87 +0.4 694,501 - ABZR87_RS03290 0.87 +0.2 694,501 - ABZR87_RS03290 0.87 -1.3 694,689 - +1.2 694,689 - +1.7 694,729 - -0.2 695,105 + ABZR87_RS03295 0.31 +0.4 695,106 - ABZR87_RS03295 0.31 -1.0 695,106 - ABZR87_RS03295 0.31 -0.7 695,106 - ABZR87_RS03295 0.31 +0.4 695,106 - ABZR87_RS03295 0.31 +0.4 695,106 - ABZR87_RS03295 0.31 -0.4 695,132 + ABZR87_RS03295 0.33 -0.2 695,132 + ABZR87_RS03295 0.33 -0.5 695,132 + ABZR87_RS03295 0.33 -1.9 695,132 + ABZR87_RS03295 0.33 -2.4 695,132 + ABZR87_RS03295 0.33 -0.8 695,132 + ABZR87_RS03295 0.33 -0.1 695,132 + ABZR87_RS03295 0.33 +0.3 695,132 + ABZR87_RS03295 0.33 -0.7 695,132 + ABZR87_RS03295 0.33 -1.3 695,133 - ABZR87_RS03295 0.33 +0.3 695,133 - ABZR87_RS03295 0.33 -0.6 695,133 - ABZR87_RS03295 0.33 +1.5 695,206 - ABZR87_RS03295 0.40 -0.5 695,206 - ABZR87_RS03295 0.40 +0.1 695,439 - ABZR87_RS03295 0.63 -0.2 695,450 + ABZR87_RS03295 0.64 +0.6 695,450 + ABZR87_RS03295 0.64 +1.2 695,450 + ABZR87_RS03295 0.64 -3.0 695,451 - ABZR87_RS03295 0.64 +0.7 695,456 + ABZR87_RS03295 0.65 -0.3 695,456 + ABZR87_RS03295 0.65 -0.3 695,457 - ABZR87_RS03295 0.65 +1.1 695,457 - ABZR87_RS03295 0.65 -0.2 695,457 - ABZR87_RS03295 0.65 +0.7 695,457 - ABZR87_RS03295 0.65 +0.6 695,457 - ABZR87_RS03295 0.65 +0.4 695,457 - ABZR87_RS03295 0.65 +0.5 695,556 - ABZR87_RS03295 0.75 +0.3 695,692 + ABZR87_RS03295 0.88 -0.1 695,692 + ABZR87_RS03295 0.88 -1.9 695,693 - ABZR87_RS03295 0.88 +0.4 695,693 - ABZR87_RS03295 0.88 +1.3 695,693 - ABZR87_RS03295 0.88 -0.4 695,693 - ABZR87_RS03295 0.88 -1.6 695,737 - -0.8 695,737 - -0.8 695,737 - -0.4 695,737 - +0.8 695,738 + -0.9 695,738 + +0.2 695,738 + +0.8 695,738 + +1.3 695,738 + -0.5 695,738 + -0.5 695,739 - -0.7 695,739 - +0.3 695,798 + -1.6 695,798 + -2.6 695,799 - -1.7 695,799 - -1.3 695,799 - +1.2 695,825 + +0.2 695,825 + -0.3 695,825 + -0.0 695,882 + -1.4 696,016 + ABZR87_RS03300 0.26 -2.4 696,017 - ABZR87_RS03300 0.26 -1.2 696,053 + ABZR87_RS03300 0.31 +0.4 696,339 - ABZR87_RS03300 0.70 +0.4 696,339 - ABZR87_RS03300 0.70 -0.5 696,339 - ABZR87_RS03300 0.70 +0.4 696,339 - ABZR87_RS03300 0.70 -0.4 696,354 + ABZR87_RS03300 0.72 +0.9 696,354 + ABZR87_RS03300 0.72 -0.0 696,354 + ABZR87_RS03300 0.72 -0.6 696,355 - ABZR87_RS03300 0.72 -0.2 696,355 - ABZR87_RS03300 0.72 +0.6 696,593 + +0.3 696,593 + -0.7 696,594 - -1.9 696,594 - +0.5 696,594 - -0.6 696,629 + +1.3 696,698 + -0.4 696,698 + -1.2 696,698 + +0.1 696,699 - -0.4 696,705 + +0.7 696,728 + -0.7 696,728 + -1.5 696,728 + -0.6 696,728 + -1.0 696,728 + +1.1 696,729 - +0.0 696,785 + +0.8 696,785 + -0.0 696,785 + -0.3 696,786 - +0.5 696,786 - +0.8 696,786 - +0.1
Or see this region's nucleotide sequence