Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03215

Experiment: root EcoFAB sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03210 and ABZR87_RS03215 are separated by 28 nucleotidesABZR87_RS03215 and ABZR87_RS03220 are separated by 10 nucleotides ABZR87_RS03210: ABZR87_RS03210 - NAD(P)/FAD-dependent oxidoreductase, at 677,081 to 678,703 _RS03210 ABZR87_RS03215: ABZR87_RS03215 - SDR family NAD(P)-dependent oxidoreductase, at 678,732 to 679,622 _RS03215 ABZR87_RS03220: ABZR87_RS03220 - alpha/beta hydrolase, at 679,633 to 680,655 _RS03220 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 677.738 kb on + strand, within ABZR87_RS03210at 677.738 kb on + strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.988 kb on - strand, within ABZR87_RS03210at 677.988 kb on - strand, within ABZR87_RS03210at 678.026 kb on + strand, within ABZR87_RS03210at 678.027 kb on - strand, within ABZR87_RS03210at 678.027 kb on - strand, within ABZR87_RS03210at 678.029 kb on + strand, within ABZR87_RS03210at 678.030 kb on - strand, within ABZR87_RS03210at 678.104 kb on - strand, within ABZR87_RS03210at 678.248 kb on + strand, within ABZR87_RS03210at 678.248 kb on + strand, within ABZR87_RS03210at 678.249 kb on - strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.412 kb on - strand, within ABZR87_RS03210at 678.500 kb on + strand, within ABZR87_RS03210at 678.501 kb on - strand, within ABZR87_RS03210at 678.501 kb on - strand, within ABZR87_RS03210at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.952 kb on - strand, within ABZR87_RS03215at 679.203 kb on + strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.218 kb on + strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.439 kb on - strand, within ABZR87_RS03215at 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strandat 679.765 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.816 kb on + strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.817 kb on - strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.887 kb on + strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.888 kb on - strand, within ABZR87_RS03220at 679.924 kb on + strand, within ABZR87_RS03220at 680.188 kb on + strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.189 kb on - strand, within ABZR87_RS03220at 680.278 kb on + strand, within ABZR87_RS03220at 680.278 kb on + strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.279 kb on - strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.335 kb on + strand, within ABZR87_RS03220at 680.401 kb on - strand, within ABZR87_RS03220at 680.401 kb on - strand, within ABZR87_RS03220at 680.524 kb on + strand, within ABZR87_RS03220at 680.524 kb on + strand, within ABZR87_RS03220at 680.525 kb on - strand, within ABZR87_RS03220at 680.541 kb on + strand, within ABZR87_RS03220at 680.542 kb on - strand, within ABZR87_RS03220

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Per-strain Table

Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB
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677,738 + ABZR87_RS03210 0.40 -1.3
677,738 + ABZR87_RS03210 0.40 -1.1
677,739 - ABZR87_RS03210 0.41 +0.6
677,739 - ABZR87_RS03210 0.41 -1.3
677,739 - ABZR87_RS03210 0.41 +0.6
677,852 + ABZR87_RS03210 0.48 -0.3
677,852 + ABZR87_RS03210 0.48 -0.9
677,852 + ABZR87_RS03210 0.48 -0.3
677,852 + ABZR87_RS03210 0.48 +0.4
677,852 + ABZR87_RS03210 0.48 +1.0
677,853 - ABZR87_RS03210 0.48 -1.4
677,853 - ABZR87_RS03210 0.48 +0.1
677,853 - ABZR87_RS03210 0.48 +0.3
677,987 + ABZR87_RS03210 0.56 -0.1
677,987 + ABZR87_RS03210 0.56 -0.1
677,987 + ABZR87_RS03210 0.56 +1.9
677,988 - ABZR87_RS03210 0.56 -1.5
677,988 - ABZR87_RS03210 0.56 -2.0
678,026 + ABZR87_RS03210 0.58 -1.0
678,027 - ABZR87_RS03210 0.58 +0.7
678,027 - ABZR87_RS03210 0.58 -0.3
678,029 + ABZR87_RS03210 0.58 +0.3
678,030 - ABZR87_RS03210 0.58 +0.4
678,104 - ABZR87_RS03210 0.63 +1.2
678,248 + ABZR87_RS03210 0.72 +0.4
678,248 + ABZR87_RS03210 0.72 -0.1
678,249 - ABZR87_RS03210 0.72 +0.0
678,356 + ABZR87_RS03210 0.79 -0.1
678,356 + ABZR87_RS03210 0.79 -0.4
678,356 + ABZR87_RS03210 0.79 -0.1
678,356 + ABZR87_RS03210 0.79 +0.1
678,356 + ABZR87_RS03210 0.79 +1.5
678,356 + ABZR87_RS03210 0.79 -2.3
678,356 + ABZR87_RS03210 0.79 -0.5
678,356 + ABZR87_RS03210 0.79 +0.8
678,356 + ABZR87_RS03210 0.79 +2.3
678,356 + ABZR87_RS03210 0.79 -3.1
678,357 - ABZR87_RS03210 0.79 +0.3
678,357 - ABZR87_RS03210 0.79 +1.2
678,357 - ABZR87_RS03210 0.79 +0.1
678,357 - ABZR87_RS03210 0.79 +0.9
678,357 - ABZR87_RS03210 0.79 -0.1
678,411 + ABZR87_RS03210 0.82 +1.2
678,411 + ABZR87_RS03210 0.82 -1.1
678,411 + ABZR87_RS03210 0.82 -0.0
678,411 + ABZR87_RS03210 0.82 +0.6
678,412 - ABZR87_RS03210 0.82 +0.2
678,500 + ABZR87_RS03210 0.87 -1.6
678,501 - ABZR87_RS03210 0.87 +0.5
678,501 - ABZR87_RS03210 0.87 +0.2
678,951 + ABZR87_RS03215 0.25 +0.4
678,951 + ABZR87_RS03215 0.25 +1.6
678,951 + ABZR87_RS03215 0.25 +0.1
678,952 - ABZR87_RS03215 0.25 -0.5
679,203 + ABZR87_RS03215 0.53 -0.7
679,204 - ABZR87_RS03215 0.53 -0.4
679,204 - ABZR87_RS03215 0.53 +1.6
679,204 - ABZR87_RS03215 0.53 -0.2
679,218 + ABZR87_RS03215 0.55 -0.2
679,219 - ABZR87_RS03215 0.55 +1.4
679,219 - ABZR87_RS03215 0.55 +0.3
679,321 + ABZR87_RS03215 0.66 +0.7
679,321 + ABZR87_RS03215 0.66 -0.7
679,321 + ABZR87_RS03215 0.66 -0.9
679,321 + ABZR87_RS03215 0.66 -2.2
679,321 + ABZR87_RS03215 0.66 -1.1
679,321 + ABZR87_RS03215 0.66 +3.1
679,322 - ABZR87_RS03215 0.66 +0.8
679,322 - ABZR87_RS03215 0.66 -0.1
679,322 - ABZR87_RS03215 0.66 -0.7
679,322 - ABZR87_RS03215 0.66 -0.9
679,322 - ABZR87_RS03215 0.66 -0.6
679,322 - ABZR87_RS03215 0.66 +0.2
679,322 - ABZR87_RS03215 0.66 -0.1
679,438 + ABZR87_RS03215 0.79 -0.1
679,438 + ABZR87_RS03215 0.79 +0.2
679,438 + ABZR87_RS03215 0.79 +0.6
679,439 - ABZR87_RS03215 0.79 +1.0
679,621 - -0.8
679,621 - +1.9
679,621 - -0.7
679,621 - -0.3
679,765 + ABZR87_RS03220 0.13 +0.5
679,816 + ABZR87_RS03220 0.18 +0.7
679,816 + ABZR87_RS03220 0.18 -1.1
679,816 + ABZR87_RS03220 0.18 -1.0
679,817 - ABZR87_RS03220 0.18 -0.8
679,817 - ABZR87_RS03220 0.18 -0.9
679,817 - ABZR87_RS03220 0.18 -1.7
679,817 - ABZR87_RS03220 0.18 -0.3
679,887 + ABZR87_RS03220 0.25 -0.9
679,887 + ABZR87_RS03220 0.25 -1.4
679,887 + ABZR87_RS03220 0.25 -0.7
679,887 + ABZR87_RS03220 0.25 -0.6
679,887 + ABZR87_RS03220 0.25 -0.4
679,887 + ABZR87_RS03220 0.25 -0.7
679,887 + ABZR87_RS03220 0.25 +0.1
679,887 + ABZR87_RS03220 0.25 -1.1
679,888 - ABZR87_RS03220 0.25 +0.5
679,888 - ABZR87_RS03220 0.25 +0.3
679,888 - ABZR87_RS03220 0.25 -1.1
679,888 - ABZR87_RS03220 0.25 +0.1
679,888 - ABZR87_RS03220 0.25 -0.3
679,888 - ABZR87_RS03220 0.25 -0.2
679,888 - ABZR87_RS03220 0.25 +0.9
679,924 + ABZR87_RS03220 0.28 +0.3
680,188 + ABZR87_RS03220 0.54 -0.1
680,189 - ABZR87_RS03220 0.54 -1.5
680,189 - ABZR87_RS03220 0.54 -1.2
680,189 - ABZR87_RS03220 0.54 +0.9
680,189 - ABZR87_RS03220 0.54 -2.2
680,278 + ABZR87_RS03220 0.63 +1.0
680,278 + ABZR87_RS03220 0.63 +1.2
680,279 - ABZR87_RS03220 0.63 -1.7
680,279 - ABZR87_RS03220 0.63 -0.2
680,279 - ABZR87_RS03220 0.63 -1.2
680,279 - ABZR87_RS03220 0.63 +0.7
680,279 - ABZR87_RS03220 0.63 -0.2
680,279 - ABZR87_RS03220 0.63 -1.5
680,335 + ABZR87_RS03220 0.69 -2.1
680,335 + ABZR87_RS03220 0.69 +1.1
680,335 + ABZR87_RS03220 0.69 +0.9
680,335 + ABZR87_RS03220 0.69 -1.5
680,335 + ABZR87_RS03220 0.69 +1.7
680,335 + ABZR87_RS03220 0.69 +0.8
680,401 - ABZR87_RS03220 0.75 +0.2
680,401 - ABZR87_RS03220 0.75 -1.3
680,524 + ABZR87_RS03220 0.87 +0.6
680,524 + ABZR87_RS03220 0.87 -0.5
680,525 - ABZR87_RS03220 0.87 +0.9
680,541 + ABZR87_RS03220 0.89 -0.2
680,542 - ABZR87_RS03220 0.89 +2.7

Or see this region's nucleotide sequence