Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02840 and ABZR87_RS02845 are separated by 284 nucleotides ABZR87_RS02845 and ABZR87_RS02850 are separated by 107 nucleotides ABZR87_RS02850 and ABZR87_RS02855 are separated by 83 nucleotides
ABZR87_RS02840: ABZR87_RS02840 - 50S ribosomal protein L3, at 588,781 to 589,434
_RS02840
ABZR87_RS02845: ABZR87_RS02845 - 30S ribosomal protein S10, at 589,719 to 590,030
_RS02845
ABZR87_RS02850: ABZR87_RS02850 - elongation factor Tu, at 590,138 to 591,346
_RS02850
ABZR87_RS02855: ABZR87_RS02855 - elongation factor G, at 591,430 to 593,556
_RS02855
Position (kb) 590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.648 kb on + strand at 589.648 kb on + strand at 589.649 kb on - strand at 589.720 kb on + strand at 589.721 kb on - strand at 589.744 kb on - strand at 590.088 kb on - strand at 590.140 kb on - strand at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850 at 590.344 kb on - strand, within ABZR87_RS02850 at 590.495 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 590.959 kb on - strand, within ABZR87_RS02850 at 591.373 kb on - strand at 591.380 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.432 kb on - strand at 591.439 kb on - strand at 591.439 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 589,648 + -0.4 589,648 + +0.4 589,649 - -2.3 589,720 + +0.9 589,721 - -0.9 589,744 - +0.5 590,088 - +0.1 590,140 - -0.2 590,344 - ABZR87_RS02850 0.17 -1.9 590,344 - ABZR87_RS02850 0.17 -2.0 590,344 - ABZR87_RS02850 0.17 -0.8 590,495 - ABZR87_RS02850 0.30 -0.3 590,959 - ABZR87_RS02850 0.68 -0.4 590,959 - ABZR87_RS02850 0.68 -0.8 590,959 - ABZR87_RS02850 0.68 +2.3 590,959 - ABZR87_RS02850 0.68 +0.7 590,959 - ABZR87_RS02850 0.68 -0.4 591,373 - +0.7 591,380 - -0.2 591,432 - +0.8 591,432 - -2.2 591,432 - -1.4 591,439 - -0.3 591,439 - -1.6
Or see this region's nucleotide sequence