Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01850 and ABZR87_RS01855 overlap by 1 nucleotides ABZR87_RS01855 and ABZR87_RS01860 are separated by 13 nucleotides ABZR87_RS01860 and ABZR87_RS01865 are separated by 134 nucleotides ABZR87_RS01865 and ABZR87_RS01870 are separated by 8 nucleotides
ABZR87_RS01850: ABZR87_RS01850 - type II secretion system F family protein, at 392,844 to 394,109
_RS01850
ABZR87_RS01855: ABZR87_RS01855 - A24 family peptidase, at 394,109 to 394,990
_RS01855
ABZR87_RS01860: ABZR87_RS01860 - dephospho-CoA kinase, at 395,004 to 395,618
_RS01860
ABZR87_RS01865: ABZR87_RS01865 - cell division protein ZapD, at 395,753 to 396,511
_RS01865
ABZR87_RS01870: ABZR87_RS01870 - DNA gyrase inhibitor YacG, at 396,520 to 396,723
_RS01870
Position (kb) 395
396 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 394.074 kb on + strand at 394.074 kb on + strand at 394.074 kb on + strand at 394.074 kb on + strand at 394.074 kb on + strand at 394.074 kb on + strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.075 kb on - strand at 394.259 kb on + strand, within ABZR87_RS01855 at 394.259 kb on + strand, within ABZR87_RS01855 at 394.259 kb on + strand, within ABZR87_RS01855 at 394.259 kb on + strand, within ABZR87_RS01855 at 394.259 kb on + strand, within ABZR87_RS01855 at 394.260 kb on - strand, within ABZR87_RS01855 at 394.260 kb on - strand, within ABZR87_RS01855 at 394.260 kb on - strand, within ABZR87_RS01855 at 394.260 kb on - strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.304 kb on + strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.305 kb on - strand, within ABZR87_RS01855 at 394.377 kb on + strand, within ABZR87_RS01855 at 394.377 kb on + strand, within ABZR87_RS01855 at 394.440 kb on - strand, within ABZR87_RS01855 at 394.485 kb on + strand, within ABZR87_RS01855 at 394.485 kb on + strand, within ABZR87_RS01855 at 394.486 kb on - strand, within ABZR87_RS01855 at 394.685 kb on + strand, within ABZR87_RS01855 at 394.686 kb on - strand, within ABZR87_RS01855 at 394.707 kb on - strand, within ABZR87_RS01855 at 394.707 kb on - strand, within ABZR87_RS01855 at 394.707 kb on - strand, within ABZR87_RS01855 at 394.715 kb on + strand, within ABZR87_RS01855 at 394.715 kb on + strand, within ABZR87_RS01855 at 394.716 kb on - strand, within ABZR87_RS01855 at 394.716 kb on - strand, within ABZR87_RS01855 at 394.716 kb on - strand, within ABZR87_RS01855 at 394.749 kb on - strand, within ABZR87_RS01855 at 394.988 kb on + strand at 395.558 kb on + strand at 395.605 kb on - strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.676 kb on + strand at 395.677 kb on - strand at 395.677 kb on - strand at 395.719 kb on + strand at 395.719 kb on + strand at 395.720 kb on - strand at 395.720 kb on - strand at 395.720 kb on - strand at 395.762 kb on + strand at 395.762 kb on + strand at 395.762 kb on + strand at 395.763 kb on - strand at 395.768 kb on + strand at 395.770 kb on + strand at 396.136 kb on + strand, within ABZR87_RS01865 at 396.136 kb on + strand, within ABZR87_RS01865 at 396.136 kb on + strand, within ABZR87_RS01865 at 396.137 kb on - strand, within ABZR87_RS01865 at 396.137 kb on - strand, within ABZR87_RS01865 at 396.161 kb on + strand, within ABZR87_RS01865 at 396.162 kb on - strand, within ABZR87_RS01865 at 396.304 kb on + strand, within ABZR87_RS01865 at 396.305 kb on - strand, within ABZR87_RS01865 at 396.317 kb on + strand, within ABZR87_RS01865 at 396.318 kb on - strand, within ABZR87_RS01865 at 396.318 kb on - strand, within ABZR87_RS01865 at 396.318 kb on - strand, within ABZR87_RS01865 at 396.318 kb on - strand, within ABZR87_RS01865 at 396.345 kb on - strand, within ABZR87_RS01865 at 396.360 kb on + strand, within ABZR87_RS01865 at 396.360 kb on + strand, within ABZR87_RS01865 at 396.361 kb on - strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.413 kb on + strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.414 kb on - strand, within ABZR87_RS01865 at 396.433 kb on + strand, within ABZR87_RS01865 at 396.433 kb on + strand, within ABZR87_RS01865
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 394,074 + -1.7 394,074 + +0.7 394,074 + +0.3 394,074 + -0.6 394,074 + +0.9 394,074 + +0.4 394,075 - -1.7 394,075 - -0.7 394,075 - +1.1 394,075 - +1.5 394,075 - +0.5 394,075 - -0.0 394,075 - -1.5 394,075 - +0.4 394,259 + ABZR87_RS01855 0.17 -2.7 394,259 + ABZR87_RS01855 0.17 -0.3 394,259 + ABZR87_RS01855 0.17 -1.7 394,259 + ABZR87_RS01855 0.17 -3.0 394,259 + ABZR87_RS01855 0.17 +0.8 394,260 - ABZR87_RS01855 0.17 -1.2 394,260 - ABZR87_RS01855 0.17 -0.8 394,260 - ABZR87_RS01855 0.17 -2.0 394,260 - ABZR87_RS01855 0.17 -0.7 394,304 + ABZR87_RS01855 0.22 -3.4 394,304 + ABZR87_RS01855 0.22 -2.2 394,304 + ABZR87_RS01855 0.22 -1.3 394,304 + ABZR87_RS01855 0.22 +0.1 394,304 + ABZR87_RS01855 0.22 -2.0 394,304 + ABZR87_RS01855 0.22 -1.5 394,304 + ABZR87_RS01855 0.22 -2.4 394,304 + ABZR87_RS01855 0.22 -2.3 394,304 + ABZR87_RS01855 0.22 -1.9 394,304 + ABZR87_RS01855 0.22 -2.1 394,304 + ABZR87_RS01855 0.22 +0.3 394,305 - ABZR87_RS01855 0.22 -2.3 394,305 - ABZR87_RS01855 0.22 -0.7 394,305 - ABZR87_RS01855 0.22 -2.4 394,305 - ABZR87_RS01855 0.22 -1.5 394,305 - ABZR87_RS01855 0.22 -0.4 394,305 - ABZR87_RS01855 0.22 -2.5 394,305 - ABZR87_RS01855 0.22 -1.2 394,377 + ABZR87_RS01855 0.30 -2.9 394,377 + ABZR87_RS01855 0.30 -2.4 394,440 - ABZR87_RS01855 0.38 -3.0 394,485 + ABZR87_RS01855 0.43 -1.9 394,485 + ABZR87_RS01855 0.43 -1.6 394,486 - ABZR87_RS01855 0.43 -1.9 394,685 + ABZR87_RS01855 0.65 -1.7 394,686 - ABZR87_RS01855 0.65 -1.4 394,707 - ABZR87_RS01855 0.68 -2.8 394,707 - ABZR87_RS01855 0.68 -0.2 394,707 - ABZR87_RS01855 0.68 -1.1 394,715 + ABZR87_RS01855 0.69 -3.9 394,715 + ABZR87_RS01855 0.69 -0.5 394,716 - ABZR87_RS01855 0.69 -1.8 394,716 - ABZR87_RS01855 0.69 -1.1 394,716 - ABZR87_RS01855 0.69 -2.1 394,749 - ABZR87_RS01855 0.73 -1.4 394,988 + +0.8 395,558 + -3.1 395,605 - -1.0 395,676 + +2.7 395,676 + -0.3 395,676 + -0.5 395,676 + +0.9 395,676 + +0.8 395,676 + +0.7 395,676 + +0.0 395,676 + -0.4 395,676 + -0.0 395,676 + -1.2 395,676 + +0.7 395,677 - +0.4 395,677 - +0.4 395,719 + -0.8 395,719 + -0.5 395,720 - -0.3 395,720 - -1.0 395,720 - -0.2 395,762 + -0.1 395,762 + -1.2 395,762 + -0.5 395,763 - +1.9 395,768 + +0.2 395,770 + -0.2 396,136 + ABZR87_RS01865 0.50 -2.7 396,136 + ABZR87_RS01865 0.50 +0.4 396,136 + ABZR87_RS01865 0.50 -0.1 396,137 - ABZR87_RS01865 0.51 -1.7 396,137 - ABZR87_RS01865 0.51 -0.2 396,161 + ABZR87_RS01865 0.54 -0.4 396,162 - ABZR87_RS01865 0.54 -0.8 396,304 + ABZR87_RS01865 0.73 -0.7 396,305 - ABZR87_RS01865 0.73 -0.6 396,317 + ABZR87_RS01865 0.74 -1.1 396,318 - ABZR87_RS01865 0.74 -0.9 396,318 - ABZR87_RS01865 0.74 +0.3 396,318 - ABZR87_RS01865 0.74 -0.5 396,318 - ABZR87_RS01865 0.74 +0.2 396,345 - ABZR87_RS01865 0.78 +0.2 396,360 + ABZR87_RS01865 0.80 -0.9 396,360 + ABZR87_RS01865 0.80 -2.5 396,361 - ABZR87_RS01865 0.80 -1.9 396,413 + ABZR87_RS01865 0.87 +0.3 396,413 + ABZR87_RS01865 0.87 -0.1 396,413 + ABZR87_RS01865 0.87 +0.1 396,413 + ABZR87_RS01865 0.87 +0.7 396,413 + ABZR87_RS01865 0.87 -0.0 396,413 + ABZR87_RS01865 0.87 -0.7 396,413 + ABZR87_RS01865 0.87 -0.4 396,414 - ABZR87_RS01865 0.87 +0.3 396,414 - ABZR87_RS01865 0.87 -1.4 396,414 - ABZR87_RS01865 0.87 +1.0 396,414 - ABZR87_RS01865 0.87 +0.2 396,414 - ABZR87_RS01865 0.87 +1.2 396,414 - ABZR87_RS01865 0.87 -1.7 396,414 - ABZR87_RS01865 0.87 -0.6 396,414 - ABZR87_RS01865 0.87 +1.9 396,414 - ABZR87_RS01865 0.87 -1.0 396,414 - ABZR87_RS01865 0.87 -2.3 396,414 - ABZR87_RS01865 0.87 +0.0 396,414 - ABZR87_RS01865 0.87 +0.4 396,414 - ABZR87_RS01865 0.87 +0.5 396,414 - ABZR87_RS01865 0.87 -0.2 396,433 + ABZR87_RS01865 0.90 +1.7 396,433 + ABZR87_RS01865 0.90 +0.5
Or see this region's nucleotide sequence