Experiment: root EcoFAB sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01590 and ABZR87_RS01595 are separated by 209 nucleotides ABZR87_RS01595 and ABZR87_RS01600 are separated by 12 nucleotides ABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotides
ABZR87_RS01590: ABZR87_RS01590 - orotidine-5'-phosphate decarboxylase, at 334,246 to 335,061
_RS01590
ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233
_RS01595
ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950
_RS01600
ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888
_RS01605
Position (kb) 335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 334.534 kb on + strand, within ABZR87_RS01590 at 334.534 kb on + strand, within ABZR87_RS01590 at 334.535 kb on - strand, within ABZR87_RS01590 at 335.114 kb on - strand at 335.211 kb on + strand at 335.211 kb on + strand at 335.212 kb on - strand at 335.216 kb on + strand at 335.217 kb on - strand at 335.412 kb on + strand, within ABZR87_RS01595 at 335.412 kb on + strand, within ABZR87_RS01595 at 335.412 kb on + strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.413 kb on - strand, within ABZR87_RS01595 at 335.469 kb on + strand, within ABZR87_RS01595 at 335.470 kb on - strand, within ABZR87_RS01595 at 335.470 kb on - strand, within ABZR87_RS01595 at 335.685 kb on + strand, within ABZR87_RS01595 at 335.685 kb on + strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.686 kb on - strand, within ABZR87_RS01595 at 335.703 kb on + strand, within ABZR87_RS01595 at 335.704 kb on - strand, within ABZR87_RS01595 at 335.861 kb on + strand, within ABZR87_RS01595 at 336.105 kb on + strand, within ABZR87_RS01595 at 336.105 kb on + strand, within ABZR87_RS01595 at 336.106 kb on - strand, within ABZR87_RS01595 at 336.106 kb on - strand, within ABZR87_RS01595 at 336.106 kb on - strand, within ABZR87_RS01595 at 336.204 kb on + strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.309 kb on + strand at 336.309 kb on + strand at 336.310 kb on - strand at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.328 kb on + strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.329 kb on - strand, within ABZR87_RS01600 at 336.390 kb on + strand, within ABZR87_RS01600 at 336.391 kb on - strand, within ABZR87_RS01600 at 336.391 kb on - strand, within ABZR87_RS01600 at 336.421 kb on + strand, within ABZR87_RS01600 at 336.421 kb on + strand, within ABZR87_RS01600 at 336.422 kb on - strand, within ABZR87_RS01600 at 336.422 kb on - strand, within ABZR87_RS01600 at 336.422 kb on - strand, within ABZR87_RS01600 at 336.481 kb on + strand, within ABZR87_RS01600 at 336.481 kb on + strand, within ABZR87_RS01600 at 336.482 kb on - strand, within ABZR87_RS01600 at 336.482 kb on - strand, within ABZR87_RS01600 at 336.482 kb on - strand, within ABZR87_RS01600 at 336.482 kb on - strand, within ABZR87_RS01600 at 336.559 kb on + strand, within ABZR87_RS01600 at 336.560 kb on - strand, within ABZR87_RS01600 at 336.757 kb on + strand, within ABZR87_RS01600 at 336.758 kb on - strand, within ABZR87_RS01600 at 336.758 kb on - strand, within ABZR87_RS01600 at 336.886 kb on + strand at 336.886 kb on + strand at 336.887 kb on - strand at 336.931 kb on + strand at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.173 kb on + strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.174 kb on - strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.185 kb on + strand, within ABZR87_RS01605 at 337.186 kb on - strand, within ABZR87_RS01605
Per-strain Table
Position Strand Gene LocusTag Fraction root EcoFAB sample 1; outgrowth in LB remove 334,534 + ABZR87_RS01590 0.35 +0.5 334,534 + ABZR87_RS01590 0.35 -0.5 334,535 - ABZR87_RS01590 0.35 +2.3 335,114 - +0.7 335,211 + -1.7 335,211 + -0.7 335,212 - +0.3 335,216 + -1.2 335,217 - +0.8 335,412 + ABZR87_RS01595 0.15 +0.3 335,412 + ABZR87_RS01595 0.15 -1.0 335,412 + ABZR87_RS01595 0.15 -0.0 335,413 - ABZR87_RS01595 0.15 -1.7 335,413 - ABZR87_RS01595 0.15 -1.8 335,413 - ABZR87_RS01595 0.15 -0.3 335,469 + ABZR87_RS01595 0.21 +0.9 335,470 - ABZR87_RS01595 0.21 +0.6 335,470 - ABZR87_RS01595 0.21 -0.7 335,685 + ABZR87_RS01595 0.43 +0.4 335,685 + ABZR87_RS01595 0.43 -0.8 335,686 - ABZR87_RS01595 0.43 -0.2 335,686 - ABZR87_RS01595 0.43 -0.2 335,686 - ABZR87_RS01595 0.43 +0.5 335,703 + ABZR87_RS01595 0.45 -1.0 335,704 - ABZR87_RS01595 0.45 -1.2 335,861 + ABZR87_RS01595 0.61 +0.1 336,105 + ABZR87_RS01595 0.87 +1.7 336,105 + ABZR87_RS01595 0.87 -0.7 336,106 - ABZR87_RS01595 0.87 -2.2 336,106 - ABZR87_RS01595 0.87 -0.1 336,106 - ABZR87_RS01595 0.87 -0.8 336,204 + +0.5 336,205 - -1.3 336,205 - -0.2 336,205 - +1.1 336,309 + +0.1 336,309 + -0.1 336,310 - +0.2 336,328 + ABZR87_RS01600 0.12 -0.2 336,328 + ABZR87_RS01600 0.12 -1.4 336,328 + ABZR87_RS01600 0.12 -1.2 336,328 + ABZR87_RS01600 0.12 -0.6 336,328 + ABZR87_RS01600 0.12 -0.2 336,328 + ABZR87_RS01600 0.12 -0.3 336,328 + ABZR87_RS01600 0.12 +0.7 336,328 + ABZR87_RS01600 0.12 +0.4 336,329 - ABZR87_RS01600 0.12 -1.7 336,329 - ABZR87_RS01600 0.12 +0.4 336,329 - ABZR87_RS01600 0.12 -0.7 336,329 - ABZR87_RS01600 0.12 -0.7 336,329 - ABZR87_RS01600 0.12 +1.3 336,329 - ABZR87_RS01600 0.12 -0.0 336,329 - ABZR87_RS01600 0.12 -0.7 336,390 + ABZR87_RS01600 0.20 -0.0 336,391 - ABZR87_RS01600 0.21 +0.6 336,391 - ABZR87_RS01600 0.21 +0.3 336,421 + ABZR87_RS01600 0.25 -1.9 336,421 + ABZR87_RS01600 0.25 -0.3 336,422 - ABZR87_RS01600 0.25 -1.0 336,422 - ABZR87_RS01600 0.25 -1.1 336,422 - ABZR87_RS01600 0.25 -2.1 336,481 + ABZR87_RS01600 0.33 -0.6 336,481 + ABZR87_RS01600 0.33 +0.1 336,482 - ABZR87_RS01600 0.33 +0.4 336,482 - ABZR87_RS01600 0.33 +0.5 336,482 - ABZR87_RS01600 0.33 -0.5 336,482 - ABZR87_RS01600 0.33 -1.0 336,559 + ABZR87_RS01600 0.44 -0.6 336,560 - ABZR87_RS01600 0.45 +0.8 336,757 + ABZR87_RS01600 0.72 -1.2 336,758 - ABZR87_RS01600 0.73 +1.0 336,758 - ABZR87_RS01600 0.73 +0.1 336,886 + -0.8 336,886 + +3.0 336,887 - +0.1 336,931 + -1.0 337,173 + ABZR87_RS01605 0.22 +0.3 337,173 + ABZR87_RS01605 0.22 -1.2 337,173 + ABZR87_RS01605 0.22 -2.2 337,173 + ABZR87_RS01605 0.22 -3.2 337,173 + ABZR87_RS01605 0.22 -1.7 337,173 + ABZR87_RS01605 0.22 -0.2 337,173 + ABZR87_RS01605 0.22 -1.5 337,173 + ABZR87_RS01605 0.22 -0.6 337,173 + ABZR87_RS01605 0.22 +0.1 337,173 + ABZR87_RS01605 0.22 -1.0 337,174 - ABZR87_RS01605 0.22 -1.3 337,174 - ABZR87_RS01605 0.22 -1.2 337,185 + ABZR87_RS01605 0.23 -0.5 337,185 + ABZR87_RS01605 0.23 -1.2 337,185 + ABZR87_RS01605 0.23 -0.8 337,186 - ABZR87_RS01605 0.23 +0.5
Or see this region's nucleotide sequence